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Entity and relation extraction is the necessary step in structuring medical text. However, the feature extraction ability of the bidirectional long short term memory network in the existing model does not achieve the best effect. At the…

Computation and Language · Computer Science 2019-10-23 Kui Xue , Yangming Zhou , Zhiyuan Ma , Tong Ruan , Huanhuan Zhang , Ping He

In this paper, we propose a new paradigm for the task of entity-relation extraction. We cast the task as a multi-turn question answering problem, i.e., the extraction of entities and relations is transformed to the task of identifying…

Computation and Language · Computer Science 2019-09-05 Xiaoya Li , Fan Yin , Zijun Sun , Xiayu Li , Arianna Yuan , Duo Chai , Mingxin Zhou , Jiwei Li

Compared to the general news domain, information extraction (IE) from biomedical text requires much broader domain knowledge. However, many previous IE methods do not utilize any external knowledge during inference. Due to the exponential…

Computation and Language · Computer Science 2021-06-02 Tuan Lai , Heng Ji , ChengXiang Zhai , Quan Hung Tran

Causal relation extraction of biomedical entities is one of the most complex tasks in biomedical text mining, which involves two kinds of information: entity relations and entity functions. One feasible approach is to take relation…

Computation and Language · Computer Science 2022-08-03 Dongling Li , Pengchao Wu , Yuehu Dong , Jinghang Gu , Longhua Qian , Guodong Zhou

Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…

Computation and Language · Computer Science 2024-03-28 Wenjun Kong , Yamei Xia

Medical information extraction consists of a group of natural language processing (NLP) tasks, which collaboratively convert clinical text to pre-defined structured formats. Current state-of-the-art (SOTA) NLP models are highly integrated…

Computation and Language · Computer Science 2022-03-09 Enwei Zhu , Qilin Sheng , Huanwan Yang , Jinpeng Li

In this study, a novel method for extracting named entities and relations from unstructured text based on the table representation is presented. By using contextualized word embeddings, the proposed method computes representations for…

Computation and Language · Computer Science 2022-01-28 Youmi Ma , Tatsuya Hiraoka , Naoaki Okazaki

We present a joint model for entity-level relation extraction from documents. In contrast to other approaches - which focus on local intra-sentence mention pairs and thus require annotations on mention level - our model operates on entity…

Computation and Language · Computer Science 2021-12-06 Markus Eberts , Adrian Ulges

Medication Extraction and Mining play an important role in healthcare NLP research due to its practical applications in hospital settings, such as their mapping into standard clinical knowledge bases (SNOMED-CT, BNF, etc.). In this work, we…

Computation and Language · Computer Science 2024-12-31 Pablo Romero , Lifeng Han , Goran Nenadic

Relation Extraction (RE) is a fundamental task of information extraction, which has attracted a large amount of research attention. Previous studies focus on extracting the relations within a sentence or document, while currently…

Computation and Language · Computer Science 2022-11-01 Fengqi Wang , Fei Li , Hao Fei , Jingye Li , Shengqiong Wu , Fangfang Su , Wenxuan Shi , Donghong Ji , Bo Cai

Joint entity and relation extraction plays a pivotal role in various applications, notably in the construction of knowledge graphs. Despite recent progress, existing approaches often fall short in two key aspects: richness of representation…

Computation and Language · Computer Science 2024-04-22 Urchade Zaratiana , Nadi Tomeh , Yann Dauxais , Pierre Holat , Thierry Charnois

To solve the problem of redundant information and overlapping relations of the entity and relation extraction model, we propose a joint extraction model. This model can directly extract multiple pairs of related entities without generating…

Computation and Language · Computer Science 2020-11-30 Yuanhao Shen , Jungang Han

Joint named entity recognition (NER) and relation extraction (RE) is a fundamental task in natural language processing for constructing knowledge graphs from unstructured text. While recent approaches treat NER and RE as separate tasks…

Computation and Language · Computer Science 2026-05-12 Ihor Stepanov , Oleksandr Lukashov , Mykhailo Shtopko , Vivek Kalyanarangan

Document-level joint entity and relation extraction is a challenging information extraction problem that requires a unified approach where a single neural network performs four sub-tasks: mention detection, coreference resolution, entity…

Computation and Language · Computer Science 2023-07-25 Witold Kosciukiewicz , Mateusz Wojcik , Tomasz Kajdanowicz , Adam Gonczarek

Relation Extraction is an important task in Information Extraction which deals with identifying semantic relations between entity mentions. Traditionally, relation extraction is carried out after entity extraction in a "pipeline" fashion,…

Computation and Language · Computer Science 2021-03-11 Sachin Pawar , Pushpak Bhattacharyya , Girish K. Palshikar

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

Domain-Specific Chinese Relation Extraction (DSCRE) aims to extract relations between entities from domain-specific Chinese text. Despite the rapid development of PLMs in recent years, especially LLMs, DSCRE still faces three core…

Computation and Language · Computer Science 2024-04-30 Zhengpeng Shi , Haoran Luo

Current approaches for clinical information extraction are inefficient in terms of computational costs and memory consumption, hindering their application to process large-scale electronic health records (EHRs). We propose an efficient…

Computation and Language · Computer Science 2023-02-09 Anthony Yazdani , Dimitrios Proios , Hossein Rouhizadeh , Douglas Teodoro

Joint entity and relation extraction framework constructs a unified model to perform entity recognition and relation extraction simultaneously, which can exploit the dependency between the two tasks to mitigate the error propagation problem…

Computation and Language · Computer Science 2021-04-19 Yongliang Shen , Xinyin Ma , Yechun Tang , Weiming Lu
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