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The semantic linked data model is at the core of the Web due to its ability to model real world entities, connect them via relationships and provide context, which could help to transform data into information and information into…

Human-Computer Interaction · Computer Science 2021-03-12 Anelia Kurteva , Hélène De Ribaupierre

Knowledge graphs (KGs) are a powerful approach for integrating heterogeneous data and making inferences in biology and many other domains, but a coherent solution for constructing, exchanging, and facilitating the downstream use of…

Vision-Language Models (VLMs) have emerged as versatile solutions for zero-shot question answering (QA) across various domains. However, enabling VLMs to effectively comprehend structured graphs and perform accurate, efficient QA remains…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Yanbin Wei , Jiangyue Yan , Chun Kang , Yang Chen , Hua Liu , James Kwok , Yu Zhang

The amount of research articles produced every day is overwhelming: scholarly knowledge is getting harder to communicate and easier to get lost. A possible solution is to represent the information in knowledge graphs: structures…

Digital Libraries · Computer Science 2023-08-31 Denis Obrezkov , Allard Oelen , Sören Auer

Here, we describe one of the first Web-scale hybrid Knowledge Graph (KG)-Large Language Model (LLM), populated with the latest peer-reviewed medical knowledge on colorectal Cancer. It is currently being evaluated to assist with both medical…

Artificial Intelligence · Computer Science 2025-01-06 Michael Gubanov , Anna Pyayt , Aleksandra Karolak

The incompleteness of Knowledge Graphs (KGs) is a crucial issue affecting the quality of AI-based services. In the scholarly domain, KGs describing research publications typically lack important information, hindering our ability to analyse…

Knowledge graphs, collectively as a knowledge network, have become critical tools for knowledge discovery in computable and explainable knowledge systems. Due to the semantic and structural complexities of biomedical data, these knowledge…

Other Quantitative Biology · Quantitative Biology 2025-09-29 Chunlei Wu , Hongfang Liu , Jason Flannick , Mark A. Musen , Andrew I. Su , Lawrence Hunter , Thomas M. Powers , Cathy H. Wu

Representations of geographic entities captured in popular knowledge graphs such as Wikidata and DBpedia are often incomplete. OpenStreetMap (OSM) is a rich source of openly available, volunteered geographic information that has a high…

Social and Information Networks · Computer Science 2020-11-20 Nicolas Tempelmeier , Elena Demidova

The integration of Artificial Intelligence (AI) into the field of drug discovery has been a growing area of interdisciplinary scientific research. However, conventional AI models are heavily limited in handling complex biomedical structures…

Machine Learning · Computer Science 2024-07-25 Zhiqiang Zhong , Anastasia Barkova , Davide Mottin

Scientific figure interpretation is a crucial capability for AI-driven scientific assistants built on advanced Large Vision Language Models. However, current datasets and benchmarks primarily focus on simple charts or other relatively…

Tables contain factual and quantitative data accompanied by various structures and contents that pose challenges for machine comprehension. Previous methods generally design task-specific architectures and objectives for individual tasks,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Weichao Zhao , Hao Feng , Qi Liu , Jingqun Tang , Shu Wei , Binghong Wu , Lei Liao , Yongjie Ye , Hao Liu , Wengang Zhou , Houqiang Li , Can Huang

In this article, we tackle the problem of standard interoperability across different standardization frameworks, and devise a knowledge-driven approach that allows for the description of standards and standardization frameworks into an…

Digital Libraries · Computer Science 2021-07-06 Irlan Grangel-Gonzalez , Maria-Esther Vidal

In recent years, following FAIR and open data principles, the number of available big data including biomedical data has been increased exponentially. In order to extract knowledge, these data should be curated, integrated, and semantically…

Databases · Computer Science 2018-11-06 Samaneh Jozashoori , Tatiana Novikova , Maria-Esther Vidal

Virtually every sector of society is experiencing a dramatic growth in the volume of unstructured textual data that is generated and published, from news and social media online interactions, through open access scholarly communications and…

Computation and Language · Computer Science 2026-03-30 Vanni Zavarella

We present a novel system that automatically extracts and generates informative and descriptive sentences from the biomedical corpus and facilitates the efficient search for relational knowledge. Unlike previous search engines or…

Computation and Language · Computer Science 2023-10-19 Kerui Zhu , Jie Huang , Kevin Chen-Chuan Chang

Large Language Models (LLMs) offer significant promise for intelligent traffic management; however, current chain-based systems like TrafficGPT are hindered by sequential task execution, high token usage, and poor scalability, making them…

Artificial Intelligence · Computer Science 2025-07-21 Nabil Abdelaziz Ferhat Taleb , Abdolazim Rezaei , Raj Atulkumar Patel , Mehdi Sookhak

Knowledge graphs (KGs) are a popular way to organise information based on ontologies or schemas and have been used across a variety of scenarios from search to recommendation. Despite advances in KGs, representing knowledge remains a…

Artificial Intelligence · Computer Science 2023-10-10 Christos Theodoropoulos , Natasha Mulligan , Thaddeus Stappenbeck , Joao Bettencourt-Silva

Adoption of recently developed methods from machine learning has given rise to creation of drug-discovery knowledge graphs (KG) that utilize the interconnected nature of the domain. Graph-based modelling of the data, combined with KG…

Machine Learning · Computer Science 2022-07-27 Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett

The trends of open science have enabled several open scholarly datasets which include millions of papers and authors. Managing, exploring, and utilizing such large and complicated datasets effectively are challenging. In recent years, the…

Artificial Intelligence · Computer Science 2025-08-19 Hung Nghiep Tran , Atsuhiro Takasu

Laboratory workflows in pharmaceutical and biomedical research encode substantial tacit knowledge -- expert judgment about failure conditions, decision branching logic, and contextual dependencies -- that remains inaccessible to protocol…

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