Related papers: DNA codes from $(\text{\textbaro}, \mathfrak{d}, \…
Let $R=\mathbb{Z}_4+u\mathbb{Z}_4,$ where $\mathbb{Z}_4$ denotes the ring of integers modulo $4$ and $u^2=0$. In the present paper, we introduce a new Gray map from $R^n$ to $\mathbb{Z}_{4}^{2n}.$ We study $(1+2u)$-constacyclic codes over…
Composite DNA is a recent novel method to increase the information capacity of DNA-based data storage above the theoretical limit of 2 bits/symbol. In this method, every composite symbol does not store a single DNA nucleotide but a mixture…
Let $\mathbb{F}_{p^m}$ be a finite field of cardinality $p^m$ and $R=\mathbb{F}_{p^m}[u]/\langle u^2\rangle=\mathbb{F}_{p^m}+u\mathbb{F}_{p^m}$ $(u^2=0)$, where $p$ is a prime and $m$ is a positive integer. For any $\lambda\in…
We present a family of quantum stabilizer codes using the structure of duadic constacyclic codes over $\mathbb{F}_4$. Within this family, quantum codes can possess varying dimensions, and their minimum distances are lower bounded by a…
Labeling of DNA molecules is a fundamental technique for DNA visualization and analysis. This process was mathematically modeled in [1], where the received sequence indicates the positions of the used labels. In this work, we develop error…
As a medium for cold data storage, DNA stands out as it promises significant gains in storage capacity and lifetime. However, it comes with its own data processing challenges to overcome. Constrained codes over the DNA alphabet…
DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…
Let $R$ be a finite commutative chain ring with unique maximal ideal $\langle \gamma\rangle$, and let $n$ be a positive integer coprime with the characteristic of $R/\langle \gamma\rangle$. In this paper, the algebraic structure of cyclic…
The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs…
Convolutional codes are constructed, designed and analysed using row and/or block structures of unit algebraic schemes. Infinite series of such codes and of codes with specific properties are derived. Properties are shown algebraically and…
While achieving a compression ratio of 2.0 bits/base, the new algorithm codes non-N bases in fixed length. It dramatically reduces the time of coding and decoding than previous DNA compression algorithms and some universal compression…
We consider the problem of storing and retrieving information from synthetic DNA media. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on their collection of substrings…
We study the amount of reliable information that can be stored in a DNA-based storage system with noisy sequencing, where each codeword is composed of short DNA molecules. We analyze a concatenated coding scheme, where the outer code is…
Code generation maps a program description to executable source code in a programming language. Existing approaches mainly rely on a recurrent neural network (RNN) as the decoder. However, we find that a program contains significantly more…
Let $\mathbb{F}_{q}$ be a finite field of cardinality $q$, $R=\mathbb{F}_{q}[u]/\langle u^4\rangle=\mathbb{F}_{q}+u\mathbb{F}_{q}+u^2\mathbb{F}_{q}+u^3\mathbb{F}_{q}$ $(u^4=0)$ which is a finite chain ring, and $n$ be a positive integer…
This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…
Constacyclic codes over finite fields are of theoretical importance as they are closely related to a number of areas of mathematics such as algebra, algebraic geometry, graph theory, combinatorial designs and number theory. However, the…
In this paper, we study negacyclic codes of odd length and of length $2^k$ over the ring $R=\mathbb{Z}_4+u\mathbb{Z}_4$, $u^2=0$. We give the complete structure of negacyclic codes for both the cases. We have obtained a minimal spanning set…
Let $q$ be a prime power and let $\mathcal{R}=\mathbb{F}_{q}[u_1,u_2, \cdots, u_k]/\langle f_i(u_i),u_iu_j-u_ju_i\rangle$ be a finite non-chain ring, where $f_i(u_i), 1\leq i \leq k$ are polynomials, not all linear, which split into…
Constacyclic codes contain cyclic codes as a subclass and have nice algebraic structures. Constacyclic codes have theoretical importance, as they are connected to a number of areas of mathematics and outperform cyclic codes in several…