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In large but finite populations, weak demographic stochasticity due to random birth and death events can lead to population extinction. The process is analogous to the escaping problem of trapped particles under random forces. Methods…

Populations and Evolution · Quantitative Biology 2018-11-28 Xiaoquan Yu , Xiang-Yi Li

Consider a supercritical birth and death process where the children acquire mutations. We study the mutation rates along the ancestral lineages in a sample of size $n$ from the population at time $T$. The mutation rate is time-inhomogenous…

Probability · Mathematics 2024-02-27 Yubo Shuai

In this review, we discuss the applications of the theory of birth-and-death processes to problems in biology, primarily, those of evolutionary genomics. The mathematical principles of the theory of these processes are briefly described.…

Quantitative Methods · Quantitative Biology 2007-05-23 Artem S. Novozhilov , Georgy P. Karev , Eugene V. Koonin

We consider the genealogical tree of a stationary continuous state branching process with immigration. For a sub-critical stable branching mechanism, we consider the genealogical tree of the extant population at some fixed time and prove…

Probability · Mathematics 2020-05-21 Romain Abraham , Jean-François Delmas , Hui He

The extinction of a single species due to demographic stochasticity is analyzed. The discrete nature of the individual agents and the Poissonian noise related to the birth-death processes result in local extinction of a metastable…

Populations and Evolution · Quantitative Biology 2009-11-13 David A. Kessler , Nadav M. Shnerb

The question of whether biological populations survive or are eventually driven to extinction has long been examined using mathematical models. In this work we study population survival or extinction using a stochastic, discrete…

Populations and Evolution · Quantitative Biology 2021-09-15 Yifei Li , Stuart T. Johnston , Pascal R. Buenzli , Peter van Heijster , Matthew J. Simpson

Recent collapses of many fisheries across the globe have challenged the mathematical approach to these systems through classic bioeconomic models. Decimated populations did not recover as fast as predicted by these models and depensatory…

Populations and Evolution · Quantitative Biology 2019-10-04 Sara Cuenda , Marta Llorente , José A. Capitán

Birth-and-death processes are widely used to model the development of biological populations. Although they are relatively simple models, their parameters can be challenging to estimate, because the likelihood can become numerically…

Statistics Theory · Mathematics 2020-10-26 Anthony C. Davison , Sophie Hautphenne , Andrea Kraus

We investigate how a catastrophic event (modeled as a temporary fall of the reproduction rate) increases the extinction probability of an isolated self-regulated stochastic population. Using a variant of the Verhulst logistic model as an…

Populations and Evolution · Quantitative Biology 2014-08-06 Michael Assaf , Alex Kamenev , Baruch Meerson

We consider a random forest $\mathcal{F}^*$, defined as a sequence of i.i.d. birth-death (BD) trees, each started at time 0 from a single ancestor, stopped at the first tree having survived up to a fixed time $T$. We denote by…

Probability · Mathematics 2015-04-24 Miraine Dávila Felipe , Amaury Lambert

We consider a fractional version of the classical nonlinear birth process of which the Yule--Furry model is a particular case. Fractionality is obtained by replacing the first order time derivative in the difference-differential equations…

Probability · Mathematics 2014-03-06 Enzo Orsingher , Federico Polito

We study the extinction risk of a fragmented population residing on a network of patches coupled by migration, where the local patch dynamics include the Allee effect. We show that mixing between patches dramatically influences the…

Populations and Evolution · Quantitative Biology 2020-02-05 Ohad Vilk , Michael Assaf

This article presents a comprehensive study of the continuous McKendrick model, which serves as a foundational framework in population dynamics and epidemiology. The model is formulated through partial differential equations that describe…

Populations and Evolution · Quantitative Biology 2026-01-23 Dragos-Patru Covei

We study bifurcations in a spatially extended nonlinear system representing population dynamics with the help of analytic calculations based on the time-independent Schr\"{o}dinger equation for a quantum particle subjected to a uniform…

Adaptation and Self-Organizing Systems · Physics 2008-11-17 Niraj Kumar , V. M. Kenkre

In branching diffusions with immigration (BDI), particles travel on independent diffusion paths in $\mathbb{R}^d$, branch at position-dependent rates and leave offspring -- randomly scattered around the parent's death position -- according…

Probability · Mathematics 2019-05-08 Matthias Hammer , Reinhard Höpfner , Tobias Berg

We investigate a neutral model for speciation and extinction, the constant rate birth-death process. The process is conditioned to have $n$ extant species today, we look at the tree distribution of the reconstructed trees-- i.e. the trees…

Probability · Mathematics 2008-03-04 Tanja Gernhard

We study a generalized discrete-time multi-type Wright-Fisher population process. The mean-field dynamics of the stochastic process is induced by a general replicator difference equation. We prove several results regarding the asymptotic…

Probability · Mathematics 2019-12-06 Alexander Roitershtein , Reza Rastegar , Robert S. Chapkin , Ivan Ivanov

In this work we address the analysis of discrete-time models of structured metapopulations subject to environmental stochasticity. Previous works on these models made use of the fact that migrations between the patches can be considered…

Populations and Evolution · Quantitative Biology 2024-02-07 Luis Sanz , Rafael Bravo de la Parra

We provide a simple set of sufficient conditions for the weak convergence of discrete Galton-Watson branching processes with immigration to continuous time and continuous state branching processes with immigration.

Probability · Mathematics 2007-05-23 Zenghu Li

We study two models of population with migration. We assume that we are given infinitely many islands with the same number r of resources, each individual consuming one unit of resources. On an island lives an individual whose genealogy is…

Probability · Mathematics 2012-06-27 Raoul Normand