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Transition in the ancestral reproduction rate and its implications for the site frequency spectrum

Probability 2024-02-27 v1 Quantitative Methods

Abstract

Consider a supercritical birth and death process where the children acquire mutations. We study the mutation rates along the ancestral lineages in a sample of size nn from the population at time TT. The mutation rate is time-inhomogenous and has a natural probabilistic interpretation. We use these results to obtain asymptotic results for the site frequency spectrum associated with the sample.

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Cite

@article{arxiv.2402.16306,
  title  = {Transition in the ancestral reproduction rate and its implications for the site frequency spectrum},
  author = {Yubo Shuai},
  journal= {arXiv preprint arXiv:2402.16306},
  year   = {2024}
}

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23 pages