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The notions of taxis and kinesis are introduced and used to describe two types of behavior of an organism in non-uniform conditions: (i) Taxis means the guided movement to more favorable conditions; (ii) Kinesis is the non-directional…

Populations and Evolution · Quantitative Biology 2018-12-06 A. N. Gorban , N. Çabukoǧlu

Diffusion models have been widely studied as effective generative tools for solving inverse problems. The main ideas focus on performing the reverse sampling process conditioned on noisy measurements, using well-established numerical…

Numerical Analysis · Mathematics 2024-10-29 Xiang Cao , Xiaoqun Zhang

In osteochondral tissue engineering (OCTE), simultaneously regenerating subchondral bone and cartilage tissue presents a significant challenge. Multiphasic scaffolds were created and manufactured using 3D printing to address this issue.…

We introduce a discrete time microscopic single particle model for kinetic transport. The kinetics is modeled by a two-state Markov chain, the transport by deterministic advection plus a random space step. The position of the particle after…

Probability · Mathematics 2011-06-16 Michel Dekking , Derong Kong

We analyze travelling wave (TW) solutions for nonlinear systems consisting of an ODE coupled to a degenerate PDE with a diffusion coefficient that vanishes as the solution tends to zero and blows up as it approaches its maximum value.…

Analysis of PDEs · Mathematics 2022-02-17 Koondanibha Mitra , Jack M. Hughes , Stefanie Sonner , Hermann J. Eberl , Jack D. Dockery

We present a mathematical study for the development of Multiple Sclerosis in which a spatio-temporal kinetic { theory} model describes, at the mesoscopic level, the dynamics of a high number of interacting agents. We consider both…

Analysis of PDEs · Mathematics 2026-01-07 Romina Travaglini , João Miguel Oliveira

This article presents a partial differential equation (PDE) of Keller-Segel (KS) type that reproduces patterns commonly observed during the growth of brain microvasculature. We provide mathematical insights into the mechanisms underlying…

Dynamical Systems · Mathematics 2026-05-04 B Ambrosio , A Garroudji , S. Fitzsimons , H Zaag , F. M. Elahi

{\bf Purpose}: To develop a geometry-governed diffusion framework that explains differential tissue response under FLASH ultra-high dose rate (UHDR) irradiation by explicitly accounting for structural heterogeneity and anomalous transport…

Medical Physics · Physics 2026-04-20 Neda Valizadeh , Robabeh Rahimi , Ramin Abolfath

Increasing the layer number of on-chip photonic neural networks (PNNs) is essential to improve its model performance. However, the successively cascading of network hidden layers results in larger integrated photonic chip areas. To address…

Machine Learning · Computer Science 2023-02-08 Yun Zhao , Hang Chen , Min Lin , Haiou Zhang , Tao Yan , Xing Lin , Ruqi Huang , Qionghai Dai

The maintenance of tissue and organ structures during dynamic homeostasis is often not well understood. In order for a system to be stable, cell renewal, cell migration and cell death must be finely balanced. Moreover, a tissue's shape must…

Tissues and Organs · Quantitative Biology 2022-05-11 Domenic P. J. Germano , Stuart T. Johnston , Edmund J. Crampin , James M. Osborne

A multiscale mathematical model is presented to describe the de novo granulation and the evolution of multispecies granular biofilms within a continuous reactor. The granule is modelled as a spherical free boundary domain with radial…

Populations and Evolution · Quantitative Biology 2022-02-02 A. Tenore , F. Russo , M. R. Mattei , B. D'Acunto , G. Collins , L. Frunzo

The ability to navigate in complex, inhomogeneous environments is fundamental to survival at all length scales, giving rise to the rapid development of various subfields in bio-locomotion such as the well established concept of chemotaxis.…

Soft Condensed Matter · Physics 2020-05-06 Yuanjian Zheng , Hartmut Löwen

The multiplicative decomposition model is widely employed for predicting residual stresses and morphologies of biological tissues due to growth. However, it relies on the assumption that the tissue is initially in a stress-free state, which…

Soft Condensed Matter · Physics 2020-09-04 Yangkun Du , Chaofeng Lü , Weiqiu Chen , Michel Destrade

A continuum theory is used to predict scaling laws for the morphological relaxation of crystal surfaces in two independent space dimensions. The goal is to unify previously disconnected experimental observations of decaying surface…

Materials Science · Physics 2009-11-13 Dionisios Margetis

In this paper, the growth-induced bending deformation of a thin hyperelastic plate is studied. For a plane-strain problem, the governing PDE system is formulated, which is composed of the mechanical equilibrium equations, the constraint…

Classical Physics · Physics 2017-10-10 Jiong Wang , Qiongyu Wang , Hui-Hui Dai

We describe a system of stochastic differential equations (SDEs) which model the interaction between processive molecular motors, such as kinesin and dynein, and the biomolecular cargo they tow as part of microtubule-based intracellular…

Probability · Mathematics 2011-11-04 Scott A. McKinley , Avanti Athreya , John Fricks , Peter R. Kramer

The macroscopic response of short fiber reinforced composites is dependent on an extensive range of microstructural parameters. Thus, micromechanical modeling of these materials is challenging and in some cases, computationally expensive.…

Machine Learning · Computer Science 2022-10-04 J. Friemann , B. Dashtbozorg , M. Fagerström , S. M. Mirkhalaf

The advancement of human healthspan and bioengineering relies heavily on predicting the behavior of complex biological systems. While high-throughput multiomics data is becoming increasingly abundant, converting this data into actionable…

Machine Learning · Computer Science 2025-12-10 Udesh Habaraduwa , Andrei Lixandru

We consider an aggregation model that consists of an active transport equation for the macroscopic population density, where the velocity has a nonlocal functional dependence on the density, modelled via an interaction potential. We set up…

Adaptation and Self-Organizing Systems · Physics 2019-09-25 Razvan C. Fetecau , Beril Zhang

During growth, tissue expands and deforms. Given its elastic properties, stresses emerge in an expanding and deforming tissue. Cell rearrangements can dissipate these stresses and numerous experiments confirm the viscoelastic properties of…

Tissues and Organs · Quantitative Biology 2017-10-20 M. D. Peters , D. Iber