Related papers: Community recommendations on cryoEM data archiving…
In this paper, we describe the approach that we employed to address the task of Entity Recognition over Wet Lab Protocols -- a shared task in EMNLP WNUT-2020 Workshop. Our approach is composed of two phases. In the first phase, we…
This paper validates 3D simulation results of electron beam melting (EBM) processes comparing experimental and numerical data. The physical setup is presented which is discretized by a three dimensional (3D) thermal lattice Boltzmann method…
Homepage of the workshop proceedings, with links to all individually archived papers
Recent highlights from the HERA experiments, Hermes, H1 and ZEUS, are reviewed and ideas for future analyses to fully exploit this unique data set are proposed. This document is a summary of a workshop on future physics with HERA data held…
Particle picking is a time-consuming step in single-particle analysis and often requires significant interventions from users, which has become a bottleneck for future automated electron cryo-microscopy (cryo-EM). Here we report a deep…
The international study group on data preservation in high energy physics, DPHEP, achieved a milestone in 2012 with the publication of its eagerly anticipated large scale report, which contains a description of data preservation activities…
This report describes the results of the eSCF Awareness Workshop on Handling Uncertainty for Data Quality Management - Challenges from Transport and Supply Chain Management that was held on June 5, 2018 in Heeze, The Netherlands. The goal…
This report summarizes the discussions and recommendations from the NSF Workshop on Algorithm-Hardware Co-design for Medical Applications, held on September 26-27, 2024, in Pittsburgh, PA. The workshop assembled an interdisciplinary cohort…
The three-dimensional structure of proteins plays a crucial role in determining their function. Protein structure prediction methods, like AlphaFold, offer rapid access to a protein structure. However, large protein complexes cannot be…
Cryogenic electron microscopy (Cryo-EM) has become an essential tool for capturing high-resolution biological structures. Despite its advantage in visualizations, the large storage size of Cryo-EM data file poses significant challenges for…
These recommendations are the result of reflections by scientists and experts who are, or have been, involved in the preservation of high-energy physics data. The work has been done under the umbrella of the Data Lifecycle panel of the…
Knowledge management (KM) involves collecting, organizing, storing, and disseminating information to improve decision-making, innovation, and performance. Implementing KM at scale has become essential for organizations to effectively…
This volume contains the proceedings of MARS 2020, the fourth workshop on Models for Formal Analysis of Real Systems held as part of ETAPS 2020, the European Joint Conferences on Theory and Practice of Software. The MARS workshop brings…
The aim of the workshop series Developments in Computational Models (DCM) is to bring together researchers who are currently developing new computational models or new features for traditional computational models, in order to foster their…
In cryo-electron microscopy (EM), molecular structures are determined from large numbers of projection images of individual particles. To harness the full power of this single-molecule information, we use the Bayesian inference of EM…
Structural dynamics of macromolecules is critical to their structural-function relationship. Cryogenic electron microscopy (CryoEM) provides snapshots of vitrified protein at different compositional and conformational states, and the…
Petabytes of data are to be processed and stored requiring millions of CPU-years in high energy particle (HEP) physics event simulation. This enormous demand is handled in worldwide distributed computing centers as part of the LHC computing…
Data from high-energy physics (HEP) experiments are collected with significant financial and human effort and are mostly unique. An inter-experimental study group on HEP data preservation and long-term analysis was convened as a panel of…
This summary of the second Terrestrial Very-Long-Baseline Atom Interferometry (TVLBAI) Workshop provides a comprehensive overview of our meeting held in London in April 2024, building on the initial discussions during the inaugural workshop…
Cryogenic electron microscopy (cryo-EM) provides images from different copies of the same biomolecule in arbitrary orientations. Here, we present an end-to-end unsupervised approach that learns individual particle orientations from cryo-EM…