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Related papers: Community recommendations on cryoEM data archiving…

200 papers

The High Energy Phyiscs community has developed and needs to maintain many tens of millions of lines of code and to integrate effectively the work of thousands of developers across large collaborations. Software needs to be built,…

The High-Throughput Experimental Materials Database (HTEM-DB) is the endpoint repository for inorganic thin-film materials data collected during combinatorial experiments at the National Renewable Energy Laboratory (NREL). This unique data…

Cryo-electron tomography (Cryo-ET) is a powerful tool in structural biology for 3D visualization of cells and biological systems at resolutions sufficient to identify individual proteins in situ. The measurements are collected by tilting…

Signal Processing · Electrical Eng. & Systems 2025-09-03 Vinith Kishore , Valentin Debarnot , AmirEhsan Khorashadizadeh , Ivan Dokmanić

This volume contains the proceedings of MARS 2017, the second workshop on Models for Formal Analysis of Real Systems, held on April 29, 2017 in Uppala, Sweden, as an affiliated workshop of ETAPS 2017, the European Joint Conferences on…

Logic in Computer Science · Computer Science 2017-03-20 Holger Hermanns , Peter Höfner

A working group on detector simulation was formed as part of the high-energy physics (HEP) Software Foundation's initiative to prepare a Community White Paper that describes the main software challenges and opportunities to be faced in the…

Regulations corroborate the importance of retrofitting existing building stocks or constructing new energy efficient district. There is, thus, a need for modeling tools to evaluate energy scenarios to better manage and design cities, and…

Computers and Society · Computer Science 2021-03-03 Martina Ferrando , Francesco Causone , Tianzhen Hong , Yixing Chen

We introduce ETOM, a five-level benchmark for evaluating multi-hop, end-to-end tool orchestration by LLM agents within a hierarchical Model-Context Protocol (MCP) ecosystem. Existing benchmarks often assess tools in isolation, overlooking…

Artificial Intelligence · Computer Science 2026-01-21 Jia-Kai Dong , I-Wei Huang , Chun-Tin Wu , Yi-Tien Tsai

These proceedings include selected papers presented at the 9th Workshop on Horn Clauses for Verification and Synthesis and the Tenth International Workshop on Verification and Program Transformation, both affiliated with ETAPS 2022. Many…

Programming Languages · Computer Science 2022-11-22 Geoffrey W. Hamilton , Temesghen Kahsai , Maurizio Proietti

Energy-based models (EBMs) offer a flexible framework for probabilistic modelling across various data domains. However, training EBMs on data in discrete or mixed state spaces poses significant challenges due to the lack of robust and fast…

Machine Learning · Statistics 2024-12-03 Tobias Schröder , Zijing Ou , Yingzhen Li , Andrew B. Duncan

Integrating machine learning techniques into RDBMSs is an important task since there are many real applications that require modeling (e.g., business intelligence, strategic analysis) as well as querying data in RDBMSs. In this paper, we…

Databases · Computer Science 2021-01-25 Kangfei Zhao , Jeffrey Xu Yu , Yu Rong , Ming Liao , Junzhou Huang

This article addresses the problem of formulating efficient and reliable operational preservation policies that ensure bit-level information integrity over long periods, and in the presence of a diverse range of real-world technical, legal,…

Cryptography and Security · Computer Science 2022-06-22 Micah Altman , Richard Landau

This is a survey of some of the currently available frameworks (opensource/commercial) in order to run distributed data applications(Hadoop, Spark) on secure enclaves. Intel, AMD, Amazon support secure enclaves on their systems Intel-SGX,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-18 Srinivasa Rao Aravilli

We propose a framework to jointly determine the deformation parameters and reconstruct the unknown volume in electron cryotomography (CryoET). CryoET aims to reconstruct three-dimensional biological samples from two-dimensional projections.…

Image and Video Processing · Electrical Eng. & Systems 2023-10-17 Valentin Debarnot , Sidharth Gupta , Konik Kothari , Ivan Dokmanic

Cryo-electron microscopy (cryo-EM) emerges as a pivotal technology for determining the architecture of cells, viruses, and protein assemblies at near-atomic resolution. Traditional particle picking, a key step in cryo-EM, struggles with…

Biomolecules · Quantitative Biology 2024-04-17 Chentianye Xu , Xueying Zhan , Min Xu

Integrating data is a basic concern in many accredited laboratories that perform a large variety of measurements. However, the present working style in engineering faculties does not focus much on this aspect. To deal with this challenge,…

Databases · Computer Science 2013-09-02 Adriana Olteanu , Grigore Stamatescu , Anca Daniela Ionita , Valentin Sgarciu

This volume contains the proceedings of the Eighth Workshop on Model-Based Testing (MBT 2013), which was held on March 17, 2013 in Rome, Italy, as a satellite event of the European Joint Conferences on Theory and Practice of Software, ETAPS…

Software Engineering · Computer Science 2013-03-05 Alexander K. Petrenko , Holger Schlingloff

This volume contains the papers accepted at the DATE Friday Workshop on Heterogeneous Architectures and Design Methods for Embedded Image Systems (HIS 2015), held in Grenoble, France, March 13, 2015. HIS 2015 was co-located with the…

Hardware Architecture · Computer Science 2015-02-27 Frank Hannig , Dietmar Fey , Anton Lokhmotov

We present a survey of tools used in the criminal justice system in the UK in three categories: data infrastructure, data analysis, and risk prediction. Many tools are currently in deployment, offering potential benefits, including improved…

Computers and Society · Computer Science 2022-06-03 Miri Zilka , Holli Sargeant , Adrian Weller

The Workshop on Coalgebra, Horn Clause Logic Programming and Types was held on the 28-29 November 2016 in Edinburgh. The workshop marked the end of the EPSRC Grant Coalgebraic Logic Programming for Type Inference, by E. Komendantskaya,…

Logic in Computer Science · Computer Science 2017-09-14 Ekaterina Komendantskaya , John Power

We propose an Event-B framework for modeling the underlying theoretical foundations of Event-B. The aim of this framework is to reuse, for Event-B itself, the refinement development process. This framework introduces first, a functional…

Software Engineering · Computer Science 2017-01-05 Jean-Paul Bodeveix , Mamoun Filali , Mohamed Tahar Bhiri , Badr Siala
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