Related papers: Community recommendations on cryoEM data archiving…

Data from high-energy physics (HEP) experiments are collected with significant financial and human effort and are in many cases unique. At the same time, HEP has no coherent strategy for data preservation and re-use, and many important and…

Cryo-electron tomography (cryo-ET) is an emerging technology for the 3D visualization of structural organizations and interactions of subcellular components at near-native state and sub-molecular resolution. Tomograms captured by cryo-ET…

In single-particle cryo-electron microscopy (cryo-EM), the efficient determination of orientation parameters for 2D projection images poses a significant challenge yet is crucial for reconstructing 3D structures. This task is complicated by…

This volume contains the proceedings of the Eighth Workshop on Fixed Points in Computer Science which took place on 24 March 2012 in Tallinn, Estonia as an ETAPS-affiliated workshop. Past workshops have been held in Brno (1998, MFCS/CSL…

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available…

Cryo-electron microscopy (cryo-EM) extracts single-particle density projections of individual biomolecules. Although cryo-EM is widely used for 3D reconstruction, due to its single-particle nature, it has the potential to provide…

This manuscript summarizes the outcome of the focus groups at "The f(A)bulous workshop on matrix functions and exponential integrators", held at the Max Planck Institute for Dynamics of Complex Technical Systems in Magdeburg, Germany, on…

In November 2022, the HEP Software Foundation and the Institute for Research and Innovation for Software in High-Energy Physics organized a workshop on the topic of Software Citation and Recognition in HEP. The goal of the workshop was to…

Understanding how data quality aligns with regulatory requirements in machine learning (ML) systems presents a critical challenge for practitioners navigating the evolving EU regulatory landscape. To address this, we first propose a…

The cryo-electron microscope (cryo-EM) is increasingly popular these years. It helps to uncover the biological structures and functions of macromolecules. In this paper, we address image denoising problem in cryo-EM. Denoising the cryo-EM…

The radiation hardened beam instrumentations workshop was held on February 3rd and 4th, 2022 to identify the technological challenges on the beam instrumentation for multi-Mega-Watt (MW) beam facilities. We invited a speaker from a high…

This is the report on the Workshop on Opportunities, Challenges, and Best Practices for Basic Plasma Science User Facilities, held at the University of Maryland, College Park, MD, on May 20-21, 2019.

Cryo-electron microscopy (cryo-EM) has revolutionized experimental protein structure determination. Despite advances in high resolution reconstruction, a majority of cryo-EM experiments provide either a single state of the studied…

The importance of datasharing is of increasing concern to funding bodies and institutions. With some prescience, the radiobiology community has established data sharing infrastructures over the last two decades, including STORE; however,…

Software is foundationally important to scientific and social progress, however, traditional acknowledgment of the use of others' work has not adapted in step with the rapid development and use of software in research. This report outlines…

Realizing the physics programs of the planned and upgraded high-energy physics (HEP) experiments over the next 10 years will require the HEP community to address a number of challenges in the area of software and computing. For this reason,…

Much of the exotic functionality of prime interest in quantum materials emerges from structural and electronic ground states that can only be accessed at cryogenic temperatures. Understanding device operation therefore requires structural…

This volume contains the proceedings of MARS 2022, the fifth workshop on Models for Formal Analysis of Real Systems, held as part of ETAPS 2022, the European Joint Conferences on Theory and Practice of Software. The MARS workshops bring…

Cryo-electron tomography (cryo-ET) provides a unique window into molecular organization in cellular environments (in situ). However, the interpretation of molecular structural information is complicated by several intrinsic properties of…

Data from High Energy Physics (HEP) experiments are collected with significant financial and human effort and are mostly unique. An inter-experimental study group on HEP data preservation and long-term analysis was convened as a panel of…