Related papers: Minimum Decomposition on Maxmin Trees
A major task of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on a tree. Given samples from the leaves of the Markov chain, the goal is to reconstruct…
Given a graph $G=(V,E)$ with a weight $w_v$ associated with each vertex $v\in V$, the maximum weighted induced forest problem (MWIF) consists of encountering a maximum weighted subset $V'\subseteq V$ of the vertices such that $V'$ induces a…
We show an algorithm that, given an $n$-vertex graph $G$ and a parameter $k$, in time $2^{O(k \log k)} n^{O(1)}$ finds a tree decomposition of $G$ with the following properties: * every adhesion of the tree decomposition is of size at most…
Past studies on the local limit of maximal weight matchings in edge-weighted large random graphs rely fundamentally on the assumption that the weights are atomless, which ensures that the maximal weight matching is unique. This excludes de…
Following a remark of Lawvere, we explicitly exhibit a particularly elementary bijection between the set T of finite binary trees and the set T^7 of seven-tuples of such trees. "Particularly elementary" means that the application of the…
We establish counting formulas and bijections for deformations of the braid arrangement. Precisely, we consider real hyperplane arrangements such that all the hyperplanes are of the form $x\_i-x\_j=s$ for some integer $s$. Classical…
We study the electrical distribution network reconfiguration problem, defined as follows. We are given an undirected graph with a root vertex, demand at each non-root vertex, and resistance on each edge. Then, we want to find a spanning…
A permutation array $A$ is a set of permutations on a finite set $\Omega$, say of size $n$. Given distinct permutations $\pi, \sigma\in \Omega$, we let $hd(\pi, \sigma) = |\{ x\in \Omega: \pi(x) \ne \sigma(x) \}|$, called the Hamming…
In this paper, we lay the groundwork on the comparison of phylogenetic networks based on edge contractions and expansions as edit operations, as originally proposed by Robinson and Foulds to compare trees. We prove that these operations…
In this paper, we introduce a specific type of Euclidean tree called LED (Leaves of Equal Depth) tree. LED trees can be used in computational phylogeny, since they are a natural representative of the time evolution of a set of species in a…
We solve a conjecture by Becker et al. (arXiv:2404.05963) on the topic of zero forcing regarding the number of minimal forts of a tree. They conjectured and we prove $\mathcal{F}_{T_n} \le \binom{n}{2} \mathcal{F}_{P_n}$ where…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
Although the analysis of rooted tree shape has wide-ranging applications, notions of tree balance have developed independently in different domains. In computer science, a balanced tree is one that enables efficient updating and retrieval…
The minimum linear arrangement problem on a network consists of finding the minimum sum of edge lengths that can be achieved when the vertices are arranged linearly. Although there are algorithms to solve this problem on trees in polynomial…
Reduction trees are a way of encoding a substitution procedure dictated by the relations of an algebra. We use reduction trees in the subdivision algebra to construct canonical triangulations of flow polytopes which are shellable. We…
This paper studies two classes of variational problems introduced in [7], related to the optimal shapes of tree roots and branches. Given a measure $\mu$ describing the distribution of leaves, a sunlight functional $\S(\mu)$ computes the…
Treedepth decomposition has several practical applications and can be used to speed up many parameterized algorithms. There are several works aiming to design a scalable algorithm to compute exact treedepth decompositions. Those include…
The classical Matrix-Tree Theorem allows one to list the spanning trees of a graph by monomials in the expansion of the determinant of a certain matrix. We prove that in the case of three-graphs (that is, hypergraphs whose edges have…
In the classical (min-cost) Steiner tree problem, we are given an edge-weighted undirected graph and a set of terminal nodes. The goal is to compute a min-cost tree S which spans all terminals. In this paper we consider the min-power…
We use the $q$-binomial theorem, the $q$-Gauss sum, and the ${}_2\phi_1 \rightarrow {}_2\phi_2$ transformation of Jackson to discover and prove many new weighted partition identities. These identities involve unrestricted partitions,…