Related papers: Minimum Decomposition on Maxmin Trees
We propose the first branch-&-price algorithm for the maximum agreement forest problem on unrooted binary trees: given two unrooted X-labelled binary trees we seek to partition X into a minimum number of blocks such that the induced…
We review work on `decomposition,' a property of two-dimensional theories with 1-form symmetries and, more generally, d-dimensional theories with (d-1)-form symmetries. Decomposition is the observation that such quantum field theories are…
The maximum/minimum bisection problems are, given an edge-weighted graph, to find a bipartition of the vertex set into two sets whose sizes differ by at most one, such that the total weight of edges between the two sets is…
In this paper we introduce an Euclidean decomposition of elements a_n of an increasing sequence of natural numbers into weight * level + jump which we use to classify the numbers a_n either by weight or by level. We then show that this…
Constructing the maximum spanning tree $T$ of an edge-weighted connected graph $G$ is one of the important research topics in computer science and optimization, and the related research results have played an active role in practical…
There are multiple factors which can cause the phylogenetic inference process to produce two or more conflicting hypotheses of the evolutionary history of a set X of biological entities. That is: phylogenetic trees with the same set of leaf…
In this article, we study the Euclidean minimum spanning tree problem in an imprecise setup. The problem is known as the \emph{Minimum Spanning Tree Problem with Neighborhoods} in the literature. We study the problem where the neighborhoods…
We define a graph Laplacian with vertex weights in addition to the more classical edge weights, which unifies the combinatorial Laplacian and the normalised Laplacian. Moreover, we give a combinatorial interpretation for the coefficients of…
Max-product "belief propagation" is an iterative, local, message-passing algorithm for finding the maximum a posteriori (MAP) assignment of a discrete probability distribution specified by a graphical model. Despite the spectacular success…
Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…
The transition matrix of a Markov chain $(X_k,k\geq 0)$ on a finite or infinite rooted tree is said to be almost upper-directed if, given $X_k$, the node $X_{k+1}$ is either a descendant of $X_k$ or the parent of $X_k$. It is said to be…
The last decade brought a significant increase in the amount of data and a variety of new inference methods for reconstructing the detailed evolutionary history of various cancers. This brings the need of designing efficient procedures for…
We prove polynomial upper and lower bounds on the expected size of the maximum agreement subtree of two random binary phylogenetic trees under both the uniform distribution and Yule-Harding distribution. This positively answers a question…
Over the past decade, we witness an increasing amount of interest in the design of exact exponential-time and parameterized algorithms for problems in Graph Drawing. Unfortunately, we still lack knowledge of general methods to develop such…
Given two phylogenetic trees with the $\{1, \ldots, n\}$ leaf-set the maximum agreement subtree problem asks what is the maximum size of the subset $A \subseteq \{1, \ldots, n\}$ such that the two trees are equivalent when restricted to…
The main substance of the paper concerns the growth rate and the classification (ergodicity, transience) of a family of random trees. In the basic model, new edges appear according to a Poisson process of parameter $\lambda$ and leaves can…
Seo and Shin showed that the number of rooted trees on $[n+1]$ such that the maximal decreasing subtree with the same root has $k+1$ vertices is equal to the number of functions $f:[n]\to[n]$ such that the image of $f$ contains $[k]$. We…
The aim of this chapter is to provide an adequate graph theoretic framework for the description of periodic bifurcations which have recently been discovered in descendant trees of finite p-groups. The graph theoretic concepts of rooted…
We compute the magnitude (an isometric invariant of metric spaces) of compact $\mathbb{R}$-trees and show that it equals $1 + L/2$, where $L \in [0, \infty]$ denotes the total length. Although length is the only geometric invariant captured…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…