Related papers: The Existence and Structure of Universal Partial C…

We study universal cycles of the set ${\cal P}(n,k)$ of $k$-partitions of the set $[n]:=\{1,2,\ldots,n\}$ and prove that the transition digraph associated with ${\cal P}(n,k)$ is Eulerian. But this does not imply that universal cycles (or…

We present sufficient conditions for when an ordering of universal cycles $\alpha_1, \alpha_2, \ldots, \alpha_m$ for disjoint sets $\mathbf{S}_1, \mathbf{S}_2, \ldots , \mathbf{S}_m$ can be concatenated together to obtain a universal cycle…

We introduce a variant of de Bruijn words that we call perfect necklaces. Fix a finite alphabet. Recall that a word is a finite sequence of symbols in the alphabet and a circular word, or necklace, is the equivalence class of a word under…

For a set of integers $I$, we define a $q$-ary $I$-cycle to be a assignment of the symbols 1 through $q$ to the integers modulo $q^n$ so that every word appears on some translate of $I$. This definition generalizes that of de Bruijn cycles,…

A universal cycle for permutations of length $n$ is a cyclic word or permutation, any factor of which is order-isomorphic to exactly one permutation of length $n$, and containing all permutations of length $n$ as factors. It is well known…

A cut-down de Bruijn sequence is a cyclic string of length $L$, where $1 \leq L \leq k^n$, such that every substring of length $n$ appears at most once. Etzion [Theor. Comp. Sci 44 (1986)] gives an algorithm to construct binary cut-down de…

A universal cycle for permutations is a word of length n! such that each of the n! possible relative orders of n distinct integers occurs as a cyclic interval of the word. We show how to construct such a universal cycle in which only n+1…

Partial words are sequences over a finite alphabet that may contain wildcard symbols, called holes, which match or are compatible with all letters; partial words without holes are said to be full words (or simply words). Given an infinite…

A universal cycle is a cyclic sequence in which each object of a combinatorial family appears exactly once as a contiguous window. While such cycles are well understood for many discrete structures and linear subspaces, the case of affine…

A problem of reconstructing words from their subwords involves determining the minimum amount of information needed, such as multisets of scattered subwords of a specific length or the frequency of scattered subwords from a given set, in…

Consider the collection of all t-multisets of {1,...,n}. A universal cycle on multisets is a string of numbers, each of which is between 1 and n, such that if these numbers are considered in t-sized windows, every multiset in the collection…

We prove that for every integer $n > 0$ and for every alphabet $\Sigma_k$ of size $k \geq 3$, there exists a necklace of length $n$ whose Burrows-Wheeler Transform (BWT) is completely unclustered, i.e., it consists of exactly $n$ runs with…

A de Bruijn covering code is a q-ary string S so that every q-ary string is at most R symbol changes from some n-word appearing consecutively in S. We introduce these codes and prove that they can have length close to the smallest possible…

A Universal Cycle for t-multisets of [n]={1,...,n} is a cyclic sequence of $\binom{n+t-1}{t}$ integers from [n] with the property that each t-multiset of [n] appears exactly once consecutively in the sequence. For such a sequence to exist…

De Bruijn tori, or perfect maps, are two-dimensional periodic arrays of letters from a finite alphabet, where each possible pattern of shape (m,n) appears exactly once in a single period. While the existence of certain de Bruijn tori, such…

A circular word, or a necklace, is an equivalence class under conjugation of a word. A fundamental question concerning regularities in standard words is bounding the number of distinct squares in a word of length $n$. The famous conjecture…

We define generalized de Bruijn words as those words having a Burrows-Wheeler transform that is a concatenation of permutations of the alphabet. We show that generalized de Bruijn words are in 1-to-1 correspondence with Hamiltonian cycles…

A de Bruijn sequence of order n over a k-symbol alphabet is a circular sequence where each length-n sequence occurs exactly once. We present a way of extending de Bruijn sequences by adding a new symbol to the alphabet: the extension is…

Let $\widetilde{\alpha}$ be a length-$L$ cyclic sequence of characters from a size-$K$ alphabet $\mathcal{A}$ such that the number of occurrences of any length-$m$ string on $\mathcal{A}$ as a substring of $\widetilde{\alpha}$ is $\lfloor L…

An $(m,n,R)$-de Bruijn covering array (dBCA) is a doubly periodic $M \times N$ array over an alphabet of size $q$ such that the set of all its $m \times n$ windows form a covering code with radius $R$. An upper bound of the smallest array…