Related papers: The Existence and Structure of Universal Partial C…
A universal cycle is a compact listing of a class of combinatorial objects. In this paper, we prove the existence of universal cycles of classes of labeled graphs, including simple graphs, trees, graphs with m edges, graphs with loops,…
A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] , \dots w[i_{|u|}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq |w|$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every word…
Let $f(x) \in \mathbb{Z}[x]$; for each integer $\alpha$ it is interesting to consider the number of iterates $n_{\alpha}$, if possible, needed to satisfy $f^{n_{\alpha}}(\alpha) = \alpha$. The sets $\{\alpha, f(\alpha), \ldots,…
A number of applications of Steiner triple systems (e.g. disk erasure codes) exist that require a special ordering of its blocks. Universal cycles, introduced by Chung, Diaconis, and Graham in 1992, and Gray codes are examples of listing…
We discuss results dealing with universal cycles (u-cycles) and $s$-overlap cycles, and contribute to the body of those results by proving existence of universal cycles of naturally labeled posets (NL posets), $s$-overlap cycles of words of…
A necklace is an equivalence class of words of length $n$ over an alphabet under the cyclic shift (rotation) operation. As a classical object, there have been many algorithmic results for key operations on necklaces, including counting,…
A de Bruijn sequence of order $k$ over a finite alphabet is a cyclic sequence with the property that it contains every possible $k$-sequence as a substring exactly once. Orthogonal de Bruijn sequences are collections of de Bruijn sequences…
Orientable sequences of order n are infinite periodic sequences with symbols drawn from a finite alphabet of size k with the property that any particular subsequence of length n occurs at most once in a period in either direction. They were…
Unlabelled Necklaces are an equivalence class of cyclic words under both the rotation (cyclic shift) and the relabelling operations. The relabelling of a word is a bijective mapping from the alphabet to itself. The main result of the paper…
A universal word (u-word) for $d$-dimensional permutations of length $n$ is a 2-dimensional word with $d-1$ rows, any size $n$ window of which is order-isomorphic to exactly one permutation of length $n$, and all permutations of length $n$…
We study decompositions of words into subwords that are in some sense similar, which means that one subword may be obtained from the other by a relatively simple transformation. Our main inspiration are shuffle squares, an intriguing class…
We present practical algorithms for generating universal cycles uniformly at random. In particular, we consider universal cycles for shorthand permutations, subsets and multiset permutations, weak orders, and orientable sequences.…
Universal compression of patterns of sequences generated by independently identically distributed (i.i.d.) sources with unknown, possibly large, alphabets is investigated. A pattern is a sequence of indices that contains all consecutive…
Fix a finite alphabet. A necklace is a circular word. For positive integers $n$ and~$k$, a necklace is $(n,k)$-perfect if all words of length $n$ occur $k$ times but at positions with different congruence modulo $k$, for any convention of…
For positive integers $k,n$, a de Bruijn sequence $B(k,n)$ is a finite sequence of elements drawn from $k$ characters whose subwords of length $n$ are exactly the $k^n$ words of length $n$ on $k$ characters. This paper introduces the…
It is known that there are infinite words over finite alphabets with Abelian repetition threshold arbitrarily close to 1; however, the construction previously used involves huge alphabets. In this note we give a short cyclic morphism…
Kitaev, Potapov, and Vajnovszki [On shortening u-cycles and u-words for permutations, Discrete Appl. Math, 2019] described how to shorten universal words for permutations, to length $n!+n-1-i(n-1)$ for any $i \in [(n-2)!]$, by introducing…
An acyclic set in a digraph is a set of vertices that induces an acyclic subgraph. In 2011, Harutyunyan conjectured that every planar digraph on $n$ vertices without directed 2-cycles possesses an acyclic set of size at least $3n/5$. We…
A superimposed code is a collection of binary vectors (codewords) with the property that no vector is contained in the Boolean sum of any $k$ others, enabling unique identification of codewords within any group of $k$. Superimposed codes…
We generalize the notion of a de Bruijn sequence to a "multi de Bruijn sequence": a cyclic or linear sequence that contains every k-mer over an alphabet of size q exactly m times. For example, over the binary alphabet {0,1}, the cyclic…