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Plant breeding is one of the key strategies for further enhancement of crop yields; however, effective breeding strategies require phenotypic characterisation of the available germplasm. This study sought to characterise the phenotypic…

Other Quantitative Biology · Quantitative Biology 2020-08-12 Gabriele Mongiano , Patrizia Titone , Simone Pagnoncelli , Davide Sacco , Luigi Tamborini , Roberto Pilu , Simone Bregaglio

About 2.5 billion years ago, microbes learned to harness plentiful solar energy to reduce CO$_2$ with H$_2$O, extracting energy and producing O$_2$ as waste. O$_2$ production from this metabolic process was so vigorous that it saturated its…

Earth and Planetary Astrophysics · Physics 2022-05-18 Sukrit Ranjan , Sara Seager , Zhuchang Zhan , Daniel D. B. Koll , William Bains , Janusz J. Petkowski , Jingcheng Huang , Zifan Lin

The inherent complexity of living cells as production units creates major challenges for maintaining stable and optimal bioprocess conditions, especially in open Photobioreactors (PBRs) exposed to fluctuating environments. To address this,…

Systems and Control · Electrical Eng. & Systems 2025-09-09 Juan D. Gil , Ehecatl Antonio Del Rio Chanona , José L. Guzmán , Manuel Berenguel

The most recent and promising strategies for mitigating methane emissions in ruminants are reviewed highlighting the potential of reductive acetogenesis as a viable alternative to methanogenesis. The emergence of Clustered Regularly…

Quantitative Methods · Quantitative Biology 2023-07-28 Rehema Iddi Mrutu , Kabir Mustapha Umar , Adnan Abdulhamid , Morris Agaba , Abdussamad Muhammad Abdussamad

Determining phenotype from genetic data is a fundamental challenge. Influenza A viruses undergo rapid antigenic drift and identification of emerging antigenic variants is critical to the vaccine selection process. Using former seasonal…

Recently, the RIDL-SIT technology has been field-tested for control of Aedes aegypti. The technique consists of releasing genetically modified mosquitoes carrying a "lethal gene". In 2016 the World Health Organisation (WHO) and the…

Populations and Evolution · Quantitative Biology 2020-06-02 Mario A. Natiello , Hernán G. Solari

We propose and analyze a stochastic model to investigate epigenetic mutations, i.e., modifications of the genetic information that control gene expression patterns in a cell but do not alter the DNA sequence. Epigenetic mutations are…

Analysis of PDEs · Mathematics 2024-07-09 Pablo Padilla-Longoria , Jesus Sierra

There are two main life cycles in plants, annual and perennial. These life cycles are associated with different traits that determine ecosystem function. Although life cycles are textbook examples of plant adaptation to different…

Populations and Evolution · Quantitative Biology 2023-08-01 Tyler Poppenwimer , Itay Mayrose , Niv DeMalach

Rapid environmental change and advances in data-driven analysis highlight the need not only to use computational tools, but also to foster understanding of the natural world and inspire creativity. Photosynthesis, the process that fuels…

This study examines how artificial intelligence (AI), especially Reinforcement Learning (RL), can be used in farming to boost crop yields, fine-tune nitrogen use and watering, and reduce nitrate runoff and greenhouse gases, focusing on…

Machine Learning · Computer Science 2024-02-15 Zhaoan Wang , Shaoping Xiao , Jun Wang , Ashwin Parab , Shivam Patel

To elucidate how the temperature dependence of the resistivity anisotropy of the cuprate superconductors changes with hole doping, both the in-plane and the out-of-plane resistivities (\rho_{ab} and \rho_{c}) are measured in a series of…

Superconductivity · Physics 2009-11-07 S. Ono , Yoichi Ando

The evolution of antimicrobial resistance generally occurs in an environment where antimicrobial concentration is variable, which has dramatic consequences on the microorganisms' fitness landscape, and thus on the evolution of resistance.…

Biological Physics · Physics 2018-10-23 Loïc Marrec , Anne-Florence Bitbol

In the context of global warming, tree populations rely on two primary mechanisms of adaptation: phenotypic plasticity, which enables individuals to adjust their behavior in response to environmental stress, and genetic evolution, driven by…

Populations and Evolution · Quantitative Biology 2026-01-27 Sirine Boucenna , Vasilis Dakos , Gaël Raoul

Given the extreme dependence of agriculture on weather conditions, this paper analyses the effect of climatic variations on this economic sector, by considering both a huge dataset and a flexible spatio-temporal model specification. In…

Econometrics · Economics 2020-12-11 Anna Gloria Billè , Marco Rogna

Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This…

Populations and Evolution · Quantitative Biology 2023-01-18 Eden Tian Hwa Ng , Akira R. Kinjo

We present a computational framework that integrates functional-structural plant modeling (FSPM) with an evolutionary algorithm to optimize three-dimensional maize canopy architecture for enhanced light interception under high-density…

Quantitative Methods · Quantitative Biology 2025-12-15 Nasla Saleem , Talukder Zaki Jubery , Yan Zhou , Yawei Li , Adarsh Krishnamurthy , Patrick S. Schnable , Baskar Ganapathysubramanian

The genetic code is profoundly shaped by an origin in ancient RNA-mediated interactions, needing an extended development to reach the Standard Genetic Code (SGC). That development can serially use RNA specificities, a ribonucleopeptide…

Populations and Evolution · Quantitative Biology 2024-06-13 Michael Yarus

The protective effect exerted by polyamines (Put and Spd) against cadmium (Cd) stress was investigated in Brassica juncea plants. Treatment with CdCl2 (75 micro-Mole) resulted in a rise of Cd accumulation, a decrease of fresh and dry…

Biomolecules · Quantitative Biology 2008-12-15 Michel Aoun , Annick Hourmant , Jean-Yves Cabon

Potato late blight, caused by the oomycete pathogen Phytophthora infestans, is one of the most devastating diseases affecting potato crops in the history. Although conventional detection methods of plant diseases such as PCR and LAMP are…

Quantitative Methods · Quantitative Biology 2025-06-23 Jiangnan Zhao , Hanbo Xu , Cifu Xu , Wenlong Yin , Laixin Luo , Gang Liu , Yan Wang

Cells coordinate adjustments in genome expression to accommodate changes in their environment. A drug in culture media for in vitro preclinical testing sometimes cause drastic regime shifting of genome expression system depending on the…

Cell Behavior · Quantitative Biology 2017-05-16 Panpaki Seekaki , Norichika Ogata