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Bacteria and archaea have evolved an adaptive, heritable immune system that recognizes and protects against viruses or plasmids. This system, known as the CRISPR-Cas system, allows the host to recognize and incorporate short foreign DNA or…

Populations and Evolution · Quantitative Biology 2014-01-21 Pu Han , Liang Ren Niestemski , Jeffrey E. Barrick , Michael W. Deem

A moisture-driven air capture system was developed and demonstrated for cultivating cyanobacteria and microalgae at the flask (50 mL), bench (12 L) and small pilot (840 L) scale. Purolite A501 anion exchange resin beads were found to be…

A mechanism of sympatric speciation is presented based on the interaction-induced developmental plasticity of phenotypes. First, phenotypes of individuals with identical genotypes split into a few groups, according to instability in the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Kunihiko Kaneko

Mutation rate is a key determinant of the pace as well as outcome of evolution, and variability in this rate has been shown in different scenarios to play a key role in evolutionary adaptation and resistance evolution under stress caused by…

Populations and Evolution · Quantitative Biology 2019-03-01 Dalit Engelhardt , Eugene I. Shakhnovich

Spatial environmental variation can either amplify or suppress the fixation of beneficial mutants in structured populations, yet the interplay of ecological factors and spatial structure in determining which outcome occurs remains…

Populations and Evolution · Quantitative Biology 2026-05-07 Hossein Nemati , Kamran Kaveh , Jakub Svoboda , Mohammad Reza Ejtehadi , Krishnendu Chatterjee

Diffuse pollution in rural areas due to agricultural run-off is a widespread and difficult problem to address due to the vast areas affected. Drainage channels do receive these polluted waters, but its introduction in the conventional…

Populations and Evolution · Quantitative Biology 2018-06-27 Maria Jesus Garcia-Galan , Raquel Gutierrez , Enrica Uggetti , Victor Matamoros , Joan Garcia , Ivet Ferrer

Plastic waste entering the environment through landfilling or improper disposal poses substantial risks to ecosystems and human health. Photoreforming is emerging as a clean photocatalytic technology that degrades plastic waste to organic…

Materials Science · Physics 2024-08-21 Thanh Tam Nguyen , Kaveh Edalati

Phenotype transition takes place in many biological processes such as differentiation, and understanding how a cell reprograms its global gene expression profile is a problem of rate theories. A cell phenotype transition accompanies with…

Molecular Networks · Quantitative Biology 2021-07-09 Weikang Wang , Dante Poe , Ke Ni , Jianhua Xing

Many DNA sequence variants influence phenotypes by altering gene expression. Our understanding of these variants is limited by sample sizes of current studies and by measurements of mRNA rather than protein abundance. We developed a…

Genomics · Quantitative Biology 2015-06-16 Frank W. Albert , Sebastian Treusch , Arthur H. Shockley , Joshua S. Bloom , Leonid Kruglyak

The use of biocomposites on a daily basis for industrial products brings to light the influence of environmental factors on the evolution of mechanical properties. This aging has a major influence in the lifetime of any product based on…

Applied Physics · Physics 2018-06-22 Arnaud Regazzi , Stéphane Corn , Patrick Ienny , Jean-Charles Bénézet , Anne Bergeret

Conjugation is the primary mechanism of horizontal gene transfer that spreads antibiotic resistance among bacteria. Although conjugation normally occurs in surface-associated growth (e.g., biofilms), it has been traditionally studied in…

Quantitative Methods · Quantitative Biology 2014-02-26 Peter D. Freese , Kirill S. Korolev , Jose I. Jimenez , Irene A. Chen

In physics of living systems, a search for relationships of a few macroscopic variables that emerge from many microscopic elements is a central issue. We evolved gene regulatory networks so that the expression of target genes (partial…

Biological Physics · Physics 2020-12-17 Tetsuhiro S. Hatakeyama , Kunihiko Kaneko

Polymer thin films doped with azobenzene molecules do have the ability to organize themselves in spontaneous surface relief gratings (SRG) under irradiation with a single polarized beam. To shed some light in this still unexplained…

Chemical Physics · Physics 2015-07-24 V. Teboul , R. Barille , P. Tajalli , S. Ahmadi-Kandjani , H. Tajalli , S. Zielinska , E. Ortyl

Agricultural research has fostered productivity growth, but the historical influence of anthropogenic climate change on that growth has not been quantified. We develop a robust econometric model of weather effects on global agricultural…

General Economics · Economics 2021-04-05 Ariel Ortiz-Bobea , Toby R. Ault , Carlos M. Carrillo , Robert G. Chambers , David B. Lobell

Human activity has an enormous impact on Earth, changing organisms, environments and landscapes, leading to the decline of original ecosystems and irreversible changes that create new combinations of living beings and materials. As a…

Populations and Evolution · Quantitative Biology 2026-02-10 Clara de Goes Monteiro de Carvalho Guimaraes , Pablo Jose Francisco Pena Rodrigues

The preservation of soil health is a critical challenge in the 21st century due to its significant impact on agriculture, human health, and biodiversity. We provide the first deep investigation of the predictive potential of machine…

Machine Learning · Statistics 2024-02-20 Rosa Aghdam , Xudong Tang , Shan Shan , Richard Lankau , Claudia Solís-Lemus

Cyanobacteria forming one-dimensional filaments are paradigmatic model organisms of the transition between unicellular and multicellular living forms. Under nitrogen limiting conditions, in filaments of the genus Anabaena, some cells…

Cell Behavior · Quantitative Biology 2016-10-10 Javier Munoz-Garcia , Saul Ares

Early-stage plant density is an essential trait that determines the fate of a genotype under given environmental conditions and management practices. The use of RGB images taken from UAVs may replace traditional visual counting in fields…

Computer Vision and Pattern Recognition · Computer Science 2021-09-07 Kaaviya Velumani , Raul Lopez-Lozano , Simon Madec , Wei Guo , Joss Gillet , Alexis Comar , Frederic Baret

Two years study was carried out during 2006-07 and 2007-08 crop seasons to study the response of different genotypes of oilseeds Brassica to Lipaphis erysimi (Kaltenbach) infestation both under field and screen house conditions and to find…

Other Quantitative Biology · Quantitative Biology 2017-03-24 Sarwan Kumar , M. K. Sangha

Cells adapt to different conditions by altering a vast number of components, which is measurable using transcriptome analysis. Given that a cell undergoing steady growth is constrained to sustain each of its internal components, the…

Cell Behavior · Quantitative Biology 2014-07-15 Kunihiko Kaneko , Chikara Furusawa , Tetsuya Yomo