Related papers: Polynomial invariants for cactuses
This work is divided into three parts. The first part concerns polynomials in one variable with all real roots. We consider linear transformations that preserve real rootedness, as well as matrices that preserve interlacing. The second part…
The Bollob\'as-Riordan polynomial [Math. Ann. 323, 81 (2002)] is a universal polynomial invariant for ribbon graphs. We find an extension of this polynomial for a particular family of combinatorial objects, called rank 3 weakly-colored…
We construct a new polynomial invariant of maps (graphs embedded in a compact surface, orientable or non-orientable), which contains as specializations the Krushkal polynomial, the Bollob\'as--Riordan polynomial, the Las Vergnas polynomial,…
We give an upper bound for the cactus rank of any multi-homogeneous polynomial.
New invariants for 2-dimensional cell complexes are defined, which can be interpreted as curvature bounds. These invariants are proved to be rational and computable in a companion article. This document is a survey that collects theorems…
We introduce and study so-called self-indexed graphs. These are (oriented) finite graphs endowed with a map from the set of edges to the set of vertices. Such graphs naturally arise from classical knot and link diagrams. In fact, the graphs…
Given two independent sets $I, J$ of a graph $G$, and imagine that a token (coin) is placed at each vertex of $I$. The Sliding Token problem asks if one could transform $I$ to $J$ via a sequence of elementary steps, where each step requires…
Motivated by circle graphs, and the enumeration of Euler circuits, we define a one-variable ``interlace polynomial'' for any graph. The polynomial satisfies a beautiful and unexpected reduction relation, quite different from the cut and…
In this paper, we consider different constrained partition problems for weighted trees and cactus graphs. We focus on the (l,u)-partition problem, which is the problem of partitioning a weighted graph into connected clusters such that each…
The quadratic embedding constant (QEC) of a graph $G$ is a new numeric invariant, which is defined in terms of the distance matrix and is denoted by $\mathrm{QEC}(G)$. By observing graph structure of the maximal cliques (clique graph), we…
This paper studies the relationship between undirected (unrooted) and directed (rooted) phylogenetic networks. We describe a polynomial-time algorithm for deciding whether an undirected nonbinary phylogenetic network, given the locations of…
For every finite simple connected graph $G = (V,E)$, we introduce an invariant, its blowup-polynomial $p_G(\{ n_v : v \in V \})$. This is obtained by dividing the determinant of the distance matrix of its blowup graph $G[{\bf n}]$…
Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on…
In this paper we proof that any cactus graph satisfies graph complement conjecture by finding a orthogonal representation of its complement in $\mathbb{R}^5$.
We follow the example of Tutte in his construction of the dichromate of a graph (that is, the Tutte polynomial) as a unification of the chromatic polynomial and the flow polynomial in order to construct a new polynomial invariant of maps…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
Deciding whether a given graph has a square root is a classical problem that has been studied extensively both from graph theoretic and from algorithmic perspectives. The problem is NP-complete in general, and consequently substantial…
Rooted phylogenetic networks are used by biologists to infer and represent complex evolutionary relationships between species that cannot be accurately explained by a phylogenetic tree. Tree-child networks are a particular class of rooted…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
The \textsc{Degree Realization} problem with respect to a graph family $\mathcal{F}$ is defined as follows. The input is a sequence $d$ of $n$ positive integers, and the goal is to decide whether there exists a graph $G \in \mathcal{F}$…