Related papers: Polynomial invariants for cactuses
Tree-based networks are a class of phylogenetic networks that attempt to formally capture what is meant by "tree-like" evolution. A given non-tree-based phylogenetic network, however, might appear to be very close to being tree-based, or…
This paper describes a polynomial invariant of virtual knots that is defined in terms of an integer labeling of the virtual knot diagram. This labeling is seen to derive from an essentially unique structure of affine flat biquandle for flat…
Rooted triples, rooted binary phylogenetic trees on three leaves, are sufficient to encode rooted binary phylogenetic trees. That is, if $\mathcal T$ and $\mathcal T'$ are rooted binary phylogenetic $X$-trees that infers the same set of…
The notion of a pseudoknot is defined as an equivalence class of knot diagrams that may be missing some crossing information. We provide here a topological invariant schema for pseudoknots and their relatives, 4-valent rigid vertex spatial…
We present an efficient quantum algorithm for the exact evaluation of either the fully ferromagnetic or anti-ferromagnetic q-state Potts partition function Z for a family of graphs related to irreducible cyclic codes. This problem is…
A trivalent diagram is a connected, two-colored bipartite graph (parallel edges allowed but not loops) such that every black vertex is of degree 1 or 3 and every white vertex is of degree 1 or 2, with a cyclic order imposed on every set of…
In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…
We study the existence and regularity of invariant graphs for bundle maps (or bundle correspondences with generating bundle maps motivated by ill-posed differential equations) having some relative partial hyperbolicity on non-trivial and…
We explore model based techniques of phylogenetic tree inference exercising Markov invariants. Markov invariants are group invariant polynomials and are distinct from what is known in the literature as phylogenetic invariants, although we…
In this paper, we examine roots of graph polynomials where those roots can be considered as structural graph measures. More precisely, we prove analytical results for the roots of certain modified graph polynomials and also discuss…
Stanley's symmetrized chromatic polynomial is a generalization of the ordinary chromatic polynomial to a graph invariant with values in a ring of polynomials in infnitely many variables. The ordinary chromatic polynomial is a specialization…
We determine all graphs whose matching polynomials have at most five distinct zeros. As a consequence, we find new families of graphs which are determined by their matching polynomial.
In this paper, we find recursive formulas for the Tutte polynomial of a family of small-world networks: Farey graphs, which are modular and have an exponential degree hierarchy. Then, making use of these formulas, we determine the number of…
Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant…
Recent progress in string theory has led to a reformulation of quantum-group polynomial invariants for knots and links into new polynomial invariants whose coefficients can be understood in topological terms. We describe in detail how to…
We propose a new topological invariant of unlabeled trees of N nodes. The invariant is a set of Nx2 matrices of integers, with sum_j k^{d_{i,j}} and v_i as the matrix elements, where d_{i,j} are the elements of the distance matrix and v_i…
It is well known that the coefficients of the matching polynomial are unimodal. Unimodality of the coefficients (or their absolute values) of other graph polynomials have been studied as well. One way to prove unimodality is to prove…
In digital signal processing, shift-invariant filters can be represented as a polynomial expansion of a shift operation,that is, the Z-transform representation. When extended to graph signal processing (GSP), this would mean that a…
An independent set in a graph is a set of pairwise non-adjacent vertices. The independence number $\alpha{(G)}$ is the size of a maximum independent set in the graph $G$. The independence polynomial of a graph is the generating function for…
Graph Isomorphism is such an important problem in computer science, that it has been widely studied over the last decades. It is well known that it belongs to NP class, but is not NP-complete. It is thought to be of comparable difficulty to…