Related papers: Polynomial invariants for cactuses
Let G = (V;E) be a simple graph. We consider domination polynomial, matching polynomial and edge cover polynomial of G. Graphs which their polynomials have few roots can give sometimes a very surprising information about the structure of…
In this paper, we find computational formulae for generalized characteristic polynomials of graph bundles. We show that the number of spanning trees in a graph is the partial derivative (at (0,1)) of the generalized characteristic…
In this work, we study the interlace polynomial as a generalization of a graph invariant to delta-matroids. We prove that the interlace polynomial satisfies the four-term relation for delta-matroids and determines thus a finite type…
A univariate graph polynomial P(G;X) is weakly distinguishing if for almost all finite graphs G there is a finite graph H with P(G;X)=P(H;X). We show that the clique polynomial and the independence polynomial are weakly distinguishing.…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
In a previous work, we gave a metric on the class of semibinary tree-sibling time consistent phylogenetic networks that is computable in polynomial time; in particular, the problem of deciding if two networks of this kind are isomorphic is…
Phylogenetic networks are graphs that are used to represent evolutionary relationships between different taxa. They generalize phylogenetic trees since for example, unlike trees, they permit lineages to combine. Recently, there has been…
We use the tropical geometry approach to compute absolute and relative Gromov-Witten invariants of complex surfaces which are $\CC P^1$-bundles over an elliptic curve. We also show that the tropical multiplicity used to count curves can be…
Given a function $f$ in a finite field ${\mathbb F}_q$ of $q$ elements, we define the functional graph of $f$ as a directed graph on $q$ nodes labelled by the elements of ${\mathbb F}_q$ where there is an edge from $u$ to $v$ if and only if…
The treewidth of a graph is an important invariant in structural and algorithmic graph theory. This paper studies the treewidth of line graphs. We show that determining the treewidth of the line graph of a graph $G$ is equivalent to…
In the last decade, some algebraic tools have been successfully applied to phylogenetic reconstruction. These tools are mainly based on the knowledge of equations describing algebraic varieties associated to phylogenetic trees evolving…
We introduce the notion of matrices graph, defining continued fraction algorithms where the past and the future are almost independent. We provide an algorithm to convert more general algorithms into matrices graphs. We present an algorithm…
Rooted phylogenetic networks provide an explicit representation of the evolutionary history of a set $X$ of sampled species. In contrast to phylogenetic trees which show only speciation events, networks can also accommodate reticulate…
Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…
We define a two-variable polynomial invariant of finite quandles. In many cases this invariant completely determines the algebraic structure of the quandle up to isomorphism. We use this polynomial to define a family of link invariants…
An independent set in a graph is a set of pairwise non-adjacent vertices. Let $\alpha(G)$ denote the cardinality of a maximum independent set in the graph $G = (V, E)$. Gutman and Harary defined the independence polynomial of $G$ \[ I(G;x)…
A Gauss diagram is a simple, combinatorial way to present a knot. It is known that any Vassiliev invariant may be obtained from a Gauss diagram formula that involves counting (with signs and multiplicities) subdiagrams of certain…
The ring of graph invariants is spanned by the basic graph invariants which calculate the number of subgraphs isomorphic to a given graph in other graphs. These subgraphs counting invariants are not algebraically independent. In our view…
We investigate the lattice of machine invariant classes. This is an infinite completely distributive lattice but it is not a Boolean lattice. We show the subword complexity and the growth function create machine invariant classes. So the…
In this paper, we introduce a magneto-spectral invariant for finite graphs. This invariant vanishes on trees and is maximized by complete graphs. We compute this invariant for cycles, complete graphs, wheel graphs, hypercubes, complete…