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Early endolysosomal and autophagic defects are among the earliest cellular alterations observed in Alzheimers disease (AD), yet the molecular drivers linking amyloid precursor protein (APP) metabolism to vesicle trafficking dysfunction…

Neurons and Cognition · Quantitative Biology 2026-04-28 Hao Huang , Kaijing Xu , Michael Lardelli

Antibiotic resistance presents a growing global health threat by diminishing the effectiveness of treatments and allowing once-manageable bacterial infections to persist. This study develops and analyzes an optimization-based mathematical…

Populations and Evolution · Quantitative Biology 2025-09-23 Uzzwal Kumar Mallick , Jobayer Ahmed , Khan Anik Islam , Pulak Kundu

The stacked contact process is a stochastic model for the spread of an infection within a population of hosts located on the $d$-dimensional integer lattice. Regardless of whether they are healthy or infected, hosts give birth and die at…

Probability · Mathematics 2014-10-16 Nicolas Lanchier , Yuan Zhang

Microbial pesticides can avoid many of negative effects of traditional chemical pesticides. To modelling the inhibiting effect, in this paper we propose a model of entomopathogenic nematodes killing the target insects, and inhibiting the…

Dynamical Systems · Mathematics 2022-09-13 Xiaoxiao Cui , Yonghui Xia

The process of infection of a host is complex, influenced by factors such as microbial variation within and between hosts as well as differences in dose across hosts. This study uses dose-response and within-host microbial infection models…

Populations and Evolution · Quantitative Biology 2025-04-10 Francisco J. Perez-Reche

Internalization of particles by cells plays a crucial role for adsorbing nutrients and fighting infection. Endocytosis is one of the most important mechanisms of the particles uptake which encompass multiple pathways. Although endocytosis…

Soft Condensed Matter · Physics 2020-01-28 Amir Khosravanizadeh , Pierre Sens , Farshid Mohammad-Rafiee

Since penicillin was discovered about 90 years ago, we have become used to using drugs to eradicate unwanted pathogenic cells. However, using drugs to kill bacteria, viruses or cancer cells has the serious side effect of selecting for…

Populations and Evolution · Quantitative Biology 2017-08-02 Matti Gralka , Diana Fusco , Stephen Martis , Oskar Hallatschek

As pathogens spread in a population of hosts, immunity is built up and the pool of susceptible individuals is depleted. This generates selective pressure, to which many human RNA viruses, such as influenza virus or SARS-CoV-2, respond with…

Populations and Evolution · Quantitative Biology 2024-08-29 Pierre Barrat-Charlaix , Richard A. Neher

Natural birth and death are fundamental mechanisms of population dynamics in ecosystems and have played pivotal roles in shaping population dynamics. Nevertheless, in studies of cyclic competition systems governed by the rock-paper-scissors…

Populations and Evolution · Quantitative Biology 2026-02-19 Yikang Lu , Wenhao She , Xiaofang Duan , Junpyo Park

Biological cells in soft materials can be modeled as anisotropic force contraction dipoles. The corresponding elastic interaction potentials are long-ranged ($\sim 1/r^3$ with distance $r$) and depend sensitively on elastic constants,…

Soft Condensed Matter · Physics 2009-11-07 U. S. Schwarz , S. A. Safran

Some microbial organisms are known to randomly slip into and out of hibernation, irrespective of environmental conditions [1]. In a (genetically) uniform population a typically very small subpopulation becomes metabolically inactive whereas…

Other Quantitative Biology · Quantitative Biology 2010-07-13 Ole Steuernagel , Daniel Polani

In shallow macrotidal ecosystems with large intertidal mudflats, the sediment-water coupling plays a crucial role in structuring the pelagic microbial food web functioning, since inorganic and organic matter and microbial components…

Quantitative Methods · Quantitative Biology 2014-12-24 Hélène Montanié , Pascaline Ory , Francis Orvain , Daniel Delmas , Christine Dupuy

Human behavior plays a critical role in shaping epidemic trajectories. During health crises, people respond in diverse ways in terms of self-protection and adherence to recommended measures, largely reflecting differences in how individuals…

Physics and Society · Physics 2026-01-30 Fabio Mazza , Gabriele Ricci , Francesca Colaiori , Stefano Guarino , Sandro Meloni , Fabio Saracco

To survive in harsh conditions, motile bacteria swim in complex environment and respond to the surrounding flow. Here we develop a PDE model describing how the flagella bending affects macroscopic properties of bacterial suspensions. First,…

Analysis of PDEs · Mathematics 2016-10-11 Mykhailo Potomkin , Magali Tournus , Leonid Berlyand , Igor Aranson

Magnetotactic bacteria (MTB) are of significant interest for biophysical applications, particularly in cancer treatment. The biomineralized magnetosomes produced by these bacteria are high-quality magnetic nanoparticles that form chains…

We present an SI epidemic model whereby a continuous variable captures variability in proliferative potential and resistance to infection among susceptibles. The occurrence of heritable, spontaneous changes in these phenotype and the…

Populations and Evolution · Quantitative Biology 2021-12-30 Tommaso Lorenzi , Andrea Pugliese , Mattia Sensi , Agnese Zardini

Multistability of mesoscopic, driven biochemical reaction systems has implications to a wide range of cellular processes. Using several simple models, we show that one class of bistable chemical systems has a deterministic counterpart in…

Chemical Physics · Physics 2010-11-12 Yunxin Zhang , Hao Ge , Hong Qian

Understanding and manipulating the interactions between foreign bodies and cell membranes during endo- and phagocytosis is of paramount importance, not only for the fate of living cells but also for numerous biomedical applications. This…

Soft Condensed Matter · Physics 2023-12-06 Stijn van der Ham , Jaime Agudo-Canalejo , Hanumantha Rao Vutukuri

An antibiogram is a periodic summary of antibiotic resistance results of organisms from infected patients to selected antimicrobial drugs. Antibiograms help clinicians to understand regional resistance rates and select appropriate…

Machine Learning · Computer Science 2023-05-04 Xingbo Fu , Chen Chen , Yushun Dong , Anil Vullikanti , Eili Klein , Gregory Madden , Jundong Li

While there are many well-known and extensively tested results involving diffusion-limited binary reactions, reactions involving subdiffusive reactant species are far less understood. Subdiffusive motion is characterized by a mean square…

Statistical Mechanics · Physics 2009-11-11 J. J. Ruiz-Lorenzo , S. B. Yuste , Katja Lindenberg
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