English
Related papers

Related papers: Bacteriophage effect on parasitism resistance

200 papers

Bacterial cells exhibit a diverse array of shapes and sizes, largely governed by their cell walls in conjunction with cytoskeletal proteins and internal turgor pressure. The present study develops a theoretical framework for modeling the…

Biological Physics · Physics 2024-09-25 Joydip Chaudhuri

Genetic interactions can strongly influence the fitness effects of individual mutations, yet the impact of these epistatic interactions on evolutionary dynamics remains poorly understood. Here we investigate the evolutionary role of…

Populations and Evolution · Quantitative Biology 2014-11-14 Benjamin H. Good , Michael M. Desai

Nosocomial outbreaks of bacteria are well-documented. Based on these incidents, and the heavy usage of antibiotics in hospitals, it has been assumed that antibiotic resistance evolves in hospital environments. To test this assumption, we…

Populations and Evolution · Quantitative Biology 2016-10-20 Anna Seigal , Portia Mira , Bernd Sturmfels , Miriam Barlow

The evolution of antibiotic resistance among bacteria threatens our continued ability to treat infectious diseases. The need for sustainable strategies to cure bacterial infections has never been greater. So far, all attempts to restore…

Populations and Evolution · Quantitative Biology 2015-06-12 Christiane P. Goulart , Mentar Mahmudi , Kristina A. Crona , Stephen D. Jacobs , Marcelo Kallmann , Barry G. Hall , Devin C. Greene , Miriam Barlow

Bacteria in aquatic environments often interact with particulate matter. A key example is bacterial degradation of marine snow responsible for carbon export from the upper ocean in the biological pump. The ecological interaction between…

Biological Physics · Physics 2020-04-23 Jonasz Słomka , Uria Alcolombri , Eleonora Secchi , Roman Stocker , Vicente I. Fernandez

We investigate the ground state of a few-body Bose-Fermi mixture in a one-dimensional harmonic trap with varying interaction strengths and mass ratio. A bunching-antibunching crossover of the bosonic species for increasing interspecies'…

Quantum Gases · Physics 2018-08-03 J. Chen , J. M. Schurer , P. Schmelcher

In this paper we study intra-host viral adaptation by antigenic cooperation - a mechanism of immune escape that serves as an alternative to the standard mechanism of escape by continuous genomic diversification and allows to explain a…

Populations and Evolution · Quantitative Biology 2023-04-07 Leonid Bunimovich , Athulya Ram , Pavel Skums

We study the assembly of colloids in a two phase water-water system that provides an environment that can sustain bacteria, providing a new structure with rich potential to confine and structure living colloids. The water-water system,…

Soft Condensed Matter · Physics 2014-12-12 Sarah D. Hann , Mark Goulian , Daeyeon Lee , Kathleen J. Stebe

The problem of evolutionary complexification of life is considered one of the fundamental aspects in contemporary evolutionary theory. Parasitism is ubiquitous, inevitable, and arises as soon as the first replicators appear, even during the…

Molecular Networks · Quantitative Biology 2024-01-01 Alexander Spirov

General laws in ecological parasitology are scarce. Here we evaluate data published by over 100 authors to determine whether the number of hosts in a life cycle is associated with the degree of aggregation of fish parasites at different…

Populations and Evolution · Quantitative Biology 2016-07-20 R. J. G. Lester , R. McVinish

How typical elements that shape organisms, such as protein secondary structures, have evolved, or how evolutionarily susceptible/resistant they are to environmental changes, are significant issues in evolutionary biology, structural…

Biological Physics · Physics 2025-03-18 Tomoei Takahashi , George Chikenji , Kei Tokita , Yoshiyuki Kabashima

This paper is devoted to the analysis of a reaction-diffusion system with strong competition and spatial heterogeneities modelling the interaction between two species of mosquitoes. In particular, we propose a mathematical model that…

Analysis of PDEs · Mathematics 2025-06-19 Nicolas Vauchelet

Antimicrobial peptides (AMPs) are anti-infectives that have potential as a novel and untapped class of biotherapeutics. Modes of action of antimicrobial peptides imply interaction with cell envelope. Comprehensive understanding of…

Biomolecules · Quantitative Biology 2020-05-11 Malak Pirtskhalava , Boris Vishnepolsky , Maya Grigolava

Adhesion of bacteria to liquid-liquid interfaces can play a role in the biodegradation of dispersed hydrocarbons and in biochemical and bioprocess engineering. Whereas thermodynamic factors underpinning adhesion are well studied, the role…

Soft Condensed Matter · Physics 2020-07-29 Narendra K. Dewangan , Jacinta C. Conrad

We study exactly soluble system of trapped bosonic particles interacting by a model harmonic forces. The model allows for detailed examination of the order parameter (condensate wave function) as well as concept of the off-diagonal and…

Soft Condensed Matter · Physics 2009-10-31 Mariusz Gajda , Magdalena A. Zaluska-Kotur , Jan Mostowski

To survive starvation, Bacillus subtilis forms durable spores. After asymmetric cell division, the septum grows around the forespore in a process called engulfment, but the mechanism of force generation is unknown. Here, we derived a novel…

Subcellular Processes · Quantitative Biology 2017-10-16 Li-Wei Yap , Robert G. Endres

We study the spatial rock-paper-scissors model, where resource competitors' cyclic dominance impacts organisms' energy levels. Our model assumes that failed selection interactions can lead to energy loss, reducing the chances of success in…

Populations and Evolution · Quantitative Biology 2023-06-06 J. Menezes , E. Rangel

Species introductions promote secondary contacts between taxa with long histories of allopatric divergence. Anthropogenic contact zones thus offer valuable contrasts to speciation studies in natural systems where past spatial isolations may…

Populations and Evolution · Quantitative Biology 2020-06-11 Frédérique Viard , Cynthia Riginos , Nicolas Bierne

Clustered regularly interspaced short palindromic repeats (CRISPR) in bacterial and archaeal DNA have recently been shown to be a new type of anti-viral immune system in these organisms. We here study the diversity of spacers in CRISPR…

Populations and Evolution · Quantitative Biology 2010-08-17 Jiankui He , Michael W. Deem

In the modeling of parasite transmission dynamics, understanding the reproductive characteristics of these parasites is crucial. This paper presents a mathematical model that explores the reproductive behavior of dioecious parasites and its…

Populations and Evolution · Quantitative Biology 2023-05-30 Gonzalo Maximiliano Lopez , Juan Pablo Aparicio