English

van't Hoff-Arrhenius Analysis of Mesoscopic and Macroscopic Dynamics of Simple Biochemical Systems: Stochastic vs. Nonlinear Bistabilities

Chemical Physics 2010-11-12 v1

Abstract

Multistability of mesoscopic, driven biochemical reaction systems has implications to a wide range of cellular processes. Using several simple models, we show that one class of bistable chemical systems has a deterministic counterpart in the nonlinear dynamics based on the Law of Mass Action, while another class, widely known as noise-induced stochastic bistability, does not. Observing the system's volume (VV) playing a similar role as the inverse temperature (β\beta) in classical rate theory, an van't Hoff-Arrhenius like analysis is introduced. In one-dimensional systems, a transition rate between two states, represented in terms of a barrier in the landscape for the dynamics Φ(x,V)\Phi(x,V), kexp{VΔΦ(V)}k\propto\exp\{-V\Delta\Phi^{\ddag}(V)\}, can be understood from a decomposition ΔΦ(V)Δϕ0Δϕ1/V\Delta\Phi^{\ddag}(V) \approx\Delta\phi_0^{\ddag} \Delta\phi_1^{\ddag}/V. Nonlinear bistability means Δϕ0>0\Delta\phi_0^{\ddag}>0 while stochastic bistability has Δϕ0<0\Delta\phi_0^{\ddag}<0 but Δϕ1>0\Delta\phi_1^{\ddag}>0. Stochastic bistabilities can be viewed as remants (or "ghosts) of nonlinear bifurcations or extinction phenomenon, and Δϕ0\Delta\phi_0^{\ddag} and Δϕ1\Delta\phi_1^{\ddag} as "enthalpic" and "entropic" barriers to a transition.

Keywords

Cite

@article{arxiv.1011.2554,
  title  = {van't Hoff-Arrhenius Analysis of Mesoscopic and Macroscopic Dynamics of Simple Biochemical Systems: Stochastic vs. Nonlinear Bistabilities},
  author = {Yunxin Zhang and Hao Ge and Hong Qian},
  journal= {arXiv preprint arXiv:1011.2554},
  year   = {2010}
}