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Objective: We investigate whether deep learning techniques for natural language processing (NLP) can be used efficiently for patient phenotyping. Patient phenotyping is a classification task for determining whether a patient has a medical…

Automatic conversion of free-text radiology reports into structured data using Natural Language Processing (NLP) techniques is crucial for analyzing diseases on a large scale. While effective for tasks in widely spoken languages like…

Computation and Language · Computer Science 2024-05-24 Liam Hazan , Gili Focht , Naama Gavrielov , Roi Reichart , Talar Hagopian , Mary-Louise C. Greer , Ruth Cytter Kuint , Dan Turner , Moti Freiman

The introduction of lung cancer screening programs will produce an unprecedented amount of chest CT scans in the near future, which radiologists will have to read in order to decide on a patient follow-up strategy. According to the current…

Machine learning models have utilized semantic features, deep features, or both to assess lung nodule malignancy. However, their reliance on manual annotation during inference, limited interpretability, and sensitivity to imaging variations…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Luoting Zhuang , Seyed Mohammad Hossein Tabatabaei , Ramin Salehi-Rad , Linh M. Tran , Denise R. Aberle , Ashley E. Prosper , William Hsu

Medical image segmentation faces a fundamental challenge in continual learning: data arrives sequentially from heterogeneous sources, yet effective continual learning requires discovering which tasks share sufficient structure to benefit…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 Ziyuan Gao

Urgent suspected colorectal cancer (CRC) referrals create operational bottlenecks because semi-structured clinical documents often require manual review and transcription. The original RAPTOR system used Large Language Models for structured…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Sofiat Abioye , Ufaq Khan , Shazad Ashraf , Anusha Jose , Benjamin Wallace , William Poulett , Adam Byfield , Lukman Akanbi , Muhammad Bilal

Interventional cancer clinical trials are generally too restrictive, and some patients are often excluded on the basis of comorbidity, past or concomitant treatments, or the fact that they are over a certain age. The efficacy and safety of…

Computation and Language · Computer Science 2018-07-26 Aurelia Bustos , Antonio Pertusa

The automatic detection of critical findings in chest X-rays (CXR), such as pneumothorax, is important for assisting radiologists in their clinical workflow like triaging time-sensitive cases and screening for incidental findings. While…

Machine Learning · Computer Science 2020-01-27 Evan Schwab , André Gooßen , Hrishikesh Deshpande , Axel Saalbach

While state-of-the-art models for breast cancer detection leverage multi-view mammograms for enhanced diagnostic accuracy, they often focus solely on visual mammography data. However, radiologists document valuable lesion descriptors that…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Gil Ben-Artzi , Feras Daragma , Shahar Mahpod

Accurate endoscopic image segmentation on the polyps is critical for early colorectal cancer detection. However, this task remains challenging due to low contrast with surrounding mucosa, specular highlights, and indistinct boundaries. To…

Computer Vision and Pattern Recognition · Computer Science 2025-08-12 Juntong Fan , Shuyi Fan , Debesh Jha , Changsheng Fang , Tieyong Zeng , Hengyong Yu , Dayang Wang

Colonoscopy is currently one of the most sensitive screening methods for colorectal cancer. This study investigates the frontiers of intelligent colonoscopy techniques and their prospective implications for multimodal medical applications.…

Image and Video Processing · Electrical Eng. & Systems 2025-09-25 Ge-Peng Ji , Jingyi Liu , Peng Xu , Nick Barnes , Fahad Shahbaz Khan , Salman Khan , Deng-Ping Fan

Deep learning has successfully been leveraged for medical image segmentation. It employs convolutional neural networks (CNN) to learn distinctive image features from a defined pixel-wise objective function. However, this approach can lead…

Image and Video Processing · Electrical Eng. & Systems 2021-03-05 Kibrom Berihu Girum , Gilles Créhange , Alain Lalande

Histopathological characterization of colorectal polyps is an important principle for determining the risk of colorectal cancer and future rates of surveillance for patients. This characterization is time-intensive, requires years of…

Computer Vision and Pattern Recognition · Computer Science 2017-04-14 Bruno Korbar , Andrea M. Olofson , Allen P. Miraflor , Katherine M. Nicka , Matthew A. Suriawinata , Lorenzo Torresani , Arief A. Suriawinata , Saeed Hassanpour

This study proposes a deep learning model based on the combination of convolutional neural network (CNN) and bidirectional long short-term memory network (BiLSTM) for discriminant analysis of financial systemic risk. The model first uses…

Machine Learning · Computer Science 2025-02-12 Yu Cheng , Zhen Xu , Yuan Chen , Yuhan Wang , Zhenghao Lin , Jinsong Liu

Bootstrapping labels from radiology reports has become the scalable alternative to provide inexpensive ground truth for medical imaging. Because of the domain specific nature, state-of-the-art report labeling tools are predominantly…

Computation and Language · Computer Science 2019-10-03 Tobi Olatunji , Li Yao

Classification-based image retrieval systems are built by training convolutional neural networks (CNNs) on a relevant classification problem and using the distance in the resulting feature space as a similarity metric. However, in practical…

Computer Vision and Pattern Recognition · Computer Science 2018-10-23 Maxim Pisov , Gleb Makarchuk , Valery Kostjuchenko , Alexandra Dalechina , Andrey Golanov , Mikhail Belyaev

Deep learning models benefit from training with a large dataset (labeled or unlabeled). Following this motivation, we present an approach to learn a deep learning model for the automatic segmentation of Organs at Risk (OARs) in cervical…

Image and Video Processing · Electrical Eng. & Systems 2023-02-22 Monika Grewal , Dustin van Weersel , Henrike Westerveld , Peter A. N. Bosman , Tanja Alderliesten

Despite high performance on clinical benchmarks, large language models may reach correct conclusions through faulty reasoning, a failure mode with safety implications for oncology decision support that is not captured by accuracy-based…

Lexical analysis is believed to be a crucial step towards natural language understanding and has been widely studied. Recent years, end-to-end lexical analysis models with recurrent neural networks have gained increasing attention. In this…

Computation and Language · Computer Science 2018-07-06 Zhenyu Jiao , Shuqi Sun , Ke Sun

A significant amount of data held in Oncology Electronic Medical Records (EMRs) is contained in unstructured provider notes -- including but not limited to the chemotherapy (or cancer treatment) outcome, different biomarkers, the tumor's…