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Protein subcellular localization is an important factor in normal cellular processes and disease. While many protein localization resources treat it as static, protein localization is dynamic and heavily influenced by biological context.…

Molecular Networks · Quantitative Biology 2022-12-13 Chris S. Magnano , Anthony Gitter

The graph translation operator has been defined with good spectral properties in mind, and in particular with the end goal of being an isometric operator. Unfortunately, the resulting definitions do not provide good intuitions on a…

Discrete Mathematics · Computer Science 2020-04-24 Benjamin Girault , Paulo Gonçalves , Shrikanth Narayanan , Antonio Ortega

We introduce a new graph parameter called the burning number, inspired by contact processes on graphs such as graph bootstrap percolation, and graph searching paradigms such as Firefighter. The burning number measures the speed of the…

Combinatorics · Mathematics 2015-07-24 Anthony Bonato , Jeannette Janssen , Elham Roshanbin

We attempt to better understand randomization in local distributed graph algorithms by exploring how randomness is used and what we can gain from it: - We first ask the question of how much randomness is needed to obtain efficient…

Data Structures and Algorithms · Computer Science 2019-06-04 Mohsen Ghaffari , Fabian Kuhn

The Kneser graph $K(n,d)$ is the graph on the $d$-subsets of an $n$-set, adjacent when disjoint. Clearly, $K(n+d,d)$ is locally $K(n,d)$. Hall showed for $n \ge 3d+1$ that there are no further examples. Here we give other examples of…

Combinatorics · Mathematics 2023-12-06 A. E. Brouwer

Identifying and locating-dominating codes have been studied widely in circulant graphs of type $C_n(1,2,3,\dots, r)$ over the recent years. In 2013, Ghebleh and Niepel studied locating-dominating and identifying codes in the circulant…

Discrete Mathematics · Computer Science 2018-02-06 Ville Junnila , Tero Laihonen , Gabrielle Paris

We obtain several sharp spectral bounds, approximations, and exact values for the isoperimetric number and related edge-expansion parameters of graphs. Our results focus on graph powers and on families of graphs with rich algebraic or…

In graph pegging, we view each vertex of a graph as a hole into which a peg can be placed, with checker-like ``pegging moves'' allowed. Motivated by well-studied questions in graph pebbling, we introduce two pegging quantities. The pegging…

Combinatorics · Mathematics 2008-04-08 Geir Helleloid , Madeeha Khalid , David Petrie Moulton , Philip Matchett Wood

This article presents a survey of some recent results in the theory of spatial graphs. In particular, we highlight results related to intrinsic knotting and linking and results about symmetries of spatial graphs. In both cases we consider…

Geometric Topology · Mathematics 2018-08-14 Erica Flapan , Thomas Mattman , Blake Mellor , Ramin Naimi , Ryo Nikkuni

Graph-based learning provides a powerful framework for modeling complex relational structures; however, its application within the domain of wireless security remains significantly underexplored. In this work, we introduce the first…

Networking and Internet Architecture · Computer Science 2025-06-19 Dania Herzalla , Willian T. Lunardi , Martin Andreoni

We perform an extensive investigation of the localization properties of the eigenmodes of the Laplace and adjacency matrix for one-dimensional random geometric graphs. We evaluate the density of states, the probability distribution of the…

Disordered Systems and Neural Networks · Physics 2025-08-27 Luca Schaefer , Barbara Drossel

Closeness is an important measure of network centrality. In this article we will calculate the closeness of graphs, created by using operations on graphs. We will prove a formula for the closeness of shadow graphs. We will calculate the…

Discrete Mathematics · Computer Science 2024-12-05 Chavdar Dangalchev

We introduce and study Maker/Breaker-type positional games on random graphs. Our main concern is to determine the threshold probability $p_{F}$ for the existence of Maker's strategy to claim a member of $F$ in the unbiased game played on…

Combinatorics · Mathematics 2007-05-23 Milos Stojakovic , Tibor Szabo

Graph neural networks (GNNs) are the most widely adopted model in graph-structured data oriented learning and representation. Despite their extraordinary success in real-world applications, understanding their working mechanism by theory is…

Machine Learning · Computer Science 2023-05-16 Huayi Tang , Yong Liu

Graphs are widely used as a popular representation of the network structure of connected data. Graph data can be found in a broad spectrum of application domains such as social systems, ecosystems, biological networks, knowledge graphs, and…

Machine Learning · Computer Science 2021-05-04 Feng Xia , Ke Sun , Shuo Yu , Abdul Aziz , Liangtian Wan , Shirui Pan , Huan Liu

We consider a game in which a cop searches for a moving robber on a graph using distance probes, studied by Carragher, Choi, Delcourt, Erickson and West, which is a slight variation on one introduced by Seager. Carragher, Choi, Delcourt,…

Combinatorics · Mathematics 2020-08-12 John Haslegrave , Richard A. B. Johnson , Sebastian Koch

This article introduces a concept and measure of graph compartmentalization. This new measure allows for principled comparison between graphs of arbitrary structure, unlike existing measures such as graph modularity. The proposed measure is…

Social and Information Networks · Computer Science 2014-08-29 Matthew J. Denny

We propose a new approach for defining and searching clusters in graphs that represent real technological or transaction networks. In contrast to the standard way of finding dense parts of a graph, we concentrate on the structure of edges…

Combinatorics · Mathematics 2021-03-16 András London , Ryan R. Martin , András Pluhár

In network analysis and graph mining, closeness centrality is a popular measure to infer the importance of a vertex. Computing closeness efficiently for individual vertices received considerable attention. The NP-hard problem of group…

Data Structures and Algorithms · Computer Science 2019-11-11 Eugenio Angriman , Alexander van der Grinten , Henning Meyerhenke

We prove spectral and dynamical localization for Anderson models on locally finite graphs using the fractional moment method. Our theorems extend earlier results on localization for the Anderson model on $\ZZ^d$. We establish geometric…

Spectral Theory · Mathematics 2015-05-19 Martin Tautenhahn