Related papers: From Modular Decomposition Trees to Rooted Median …
A rooted phylogenetic network is a directed acyclic graph with a single root, whose sinks correspond to a set of species. As such networks are useful for representing the evolution of species that have undergone reticulate evolution, there…
A classic result of Brooks, Smith, Stone and Tutte associates to any finite planar network with distinguished source and sink vertices, a tiling of a rectangle by smaller subrectangles whose aspect ratios are given by the conductances of…
Arboreal networks are a generalization of rooted trees, defined by keeping the tree-like structure, but dropping the requirement for a single root. Just as the class of cographs is precisely the class of undirected graphs that can be…
The aim of this chapter is to provide an adequate graph theoretic framework for the description of periodic bifurcations which have recently been discovered in descendant trees of finite p-groups. The graph theoretic concepts of rooted…
A graph is called pseudo-outerplanar if each block has an embedding on the plane in such a way that the vertices lie on a fixed circle and the edges lie inside the disk of this circle with each of them crossing at most one another. In this…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
Consider an algebraic identity between elliptic modular graphs where several vertices are at fixed locations (and hence unintegrated) while the others are integrated over the toroidal worldsheet. At any unintegrated vertex, we can glue an…
We present a systematic investigation into how tree-decompositions of finite adhesion capture topological properties of the space formed by a graph together with its ends. As main results, we characterise when the ends of a graph can be…
Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…
Bidimensionality is the most common technique to design subexponential-time parameterized algorithms on special classes of graphs, particularly planar graphs. The core engine behind it is a combinatorial lemma of Robertson, Seymour and…
A decomposition of a graph is a set of subgraphs whose edges partition those of $G$. The 3-decomposition conjecture posed by Hoffmann-Ostenhof in 2011 states that every connected cubic graph can be decomposed into a spanning tree, a…
It is shown that graphs that generalize the ADE Dynkin diagrams and have appeared in various contexts of two-dimensional field theory may be regarded in a natural way as encoding the geometry of a root system. After recalling what are the…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
Tree representations of (sets of) symmetric binary relations, or equivalently edge-colored undirected graphs, are of central interest, e.g.\ in phylogenomics. In this context symbolic ultrametrics play a crucial role. Symbolic ultrametrics…
The modular decomposition of a graph is a canonical representation of its modules. Algorithms for computing the modular decomposition of directed and undirected graphs differ significantly, with the undirected case being simpler, and…
This paper outlines a method to determine whether two label-regular directed trees, are isomorphic and when they are almost isomorphic. The approach involves reinterpreting label-regular directed trees as universal covers of rooted graphs.…
We present time-efficient distributed algorithms for decomposing graphs with large edge or vertex connectivity into multiple spanning or dominating trees, respectively. As their primary applications, these decompositions allow us to achieve…
Let $\Delta =\{ \delta_1,\delta_2,...,\delta_m \} $ be a finite set of 2-connected patterns, i.e. graphs up to vertex relabelling. We study the generating function $D_{\Delta }(z,u_1,u_2,...,u_m),$ which counts polygon dissections and marks…
In this paper, we build on recent results by Chauve et al. (2014) and Bahrani and Lumbroso (2017), which combined the split-decomposition, as exposed by Gioan and Paul, with analytic combinatorics, to produce new enumerative results on…
The early development of a zygote can be mathematically described by a developmental tree. To compare developmental trees of different species, we need to define distances on trees. If children cells after a division are not…