Related papers: From Modular Decomposition Trees to Rooted Median …
As an extension of a classical tree-partition problem, we consider decompositions of graphs into edge-disjoint (rooted-)trees with an additional matroid constraint. Specifically, suppose we are given a graph $G=(V,E)$, a multiset…
We provide a new approach for proving the indistinguishability of connected components of random one-or-two-ended oriented forests on unimodular random graphs. In particular, this approach leads to a new and simpler proof for the wired…
A network $N$ on a finite set $X$, $|X|\geq 2$, is a connected directed acyclic graph with leaf set $X$ in which every root in $N$ has outdegree at least 2 and no vertex in $N$ has indegree and outdegree equal to 1; $N$ is arboreal if the…
Quasi-median graphs are a tool commonly used by evolutionary biologists to visualise the evolution of molecular sequences. As with any graph, a quasi-median graph can contain cut vertices, that is, vertices whose removal disconnect the…
A module of a graph G is a set of vertices that have the same set of neighbours outside. Modules of a graphs form a so-called partitive family and thereby can be represented by a unique tree MD(G), called the modular decomposition tree.…
Graphs and various graph-like combinatorial structures, such as preorders and hypergraphs, are ubiquitous in programming. This paper focuses on representing graphs in a purely functional programming language like Haskell. There are several…
A prominent tool in many problems involving metric spaces is a notion of randomized low-diameter decomposition. Loosely speaking, $\beta$-decomposition refers to a probability distribution over partitions of the metric into sets of low…
We show that if a subset $\Psi$ of the ends of a graph $G$ can be displayed by a tree-decomposition of finite adhesion, then it can also be displayed by a linked such tree-decomposition. This tree-decomposition captures all combinatorial…
Rooted tree maps assign to an element of the Connes-Kreimer Hopf algebra of rooted trees a linear map on the noncommutative polynomial algebra in two letters. Evaluated at any admissible word these maps induce linear relations between…
We introduce a class of graphs with coloured edges to encode subsystems of the classical root systems, which in particular classify them up to equivalence. We further use the graphs to describe root-kernel intersections, as well as…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
The Tree Decomposition Conjecture by Bar\'at and Thomassen states that for every tree $T$ there exists a natural number $k(T)$ such that the following holds: If $G$ is a $k(T)$-edge-connected simple graph with size divisible by the size of…
We present a new method to count unrooted maps on the sphere up to orientation-preserving homeomorphisms. The principle, called tree-decomposition, is to deform a map into an arborescent structure whose nodes are occupied by constrained…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
This paper proposes a novel representation of decomposable graphs based on semi-latent tree-dependent bipartite graphs. The novel representation has two main benefits. First, it enables a form of sub-clustering within maximal cliques of the…
The Rooted Maps Theory, a branch of the Theory of Homology, is shown to be a powerful tool for investigating the topological properties of Feynman diagrams, related to the single particle propagator in the quantum many-body systems. The…
In this paper, we survey some properties, encoding, and bijections involving combinatorial maps, double occurrence words, and chord diagrams. We particularly study quasi-trees from a purely combinatorial point of view and derive a…
Inspired by the interval decomposition of persistence modules and the extended Newick format of phylogenetic networks, we show that, inside the larger category of \textit{ordered Reeb graphs}, every Reeb graph with $n$ leaves and first…
We prove that a large family of graphs which are decomposable with respect to the modular decomposition can be reconstructed from their collection of vertex-deleted subgraphs.
Finding the dense regions of a graph and relations among them is a fundamental problem in network analysis. Core and truss decompositions reveal dense subgraphs with hierarchical relations. The incremental nature of algorithms for computing…