Related papers: From Modular Decomposition Trees to Rooted Median …
Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…
We prove that every graph has a canonical tree of tree-decompositions that distinguishes all principal tangles (these include the ends and various kinds of large finite dense structures) efficiently. Here `trees of tree-decompositions' are…
We give a short, topological proof that all graphs admit tree-decompositions displaying their topological ends.
For a graph consider the pairs of disjoint matchings which union contains as many edges as possible, and define a parameter $\alpha$ which eqauls the cardinality of the largest matching in those pairs. Also, define $\betta$ to be the…
Tree-decompositions and treewidth are of fundamental importance in structural and algorithmic graph theory. The "spread" of a tree-decomposition is the minimum integer $s$ such that every vertex lies in at most $s$ bags. A…
We study discrete period matrices associated with graphs cellularly embedded on closed surfaces, resembling classical period matrices of Riemann surfaces. Defined via integrals of discrete harmonic 1-forms, these period matrices are known…
We study the portraits of isometries of rooted trees - the labelling of the tree, at each vertex, by the permutation of its descendants - in terms of languages. We characterize regularly branched self-similar groups in terms of…
The equitable tree-coloring can formulate a structure decomposition problem on the communication network with some security considerations. Namely, an equitable tree-$k$-coloring of a graph is a vertex coloring using $k$ distinct colors…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
Extending Stallings' foldings of trees, we show in this article that every parallel-preserving map between median graphs factors as an isometric embedding through a sequence of elementary transformations which we call foldings and…
Dendrograms used in data analysis are ultrametric spaces, hence objects of nonarchimedean geometry. It is known that there exist $p$-adic representation of dendrograms. Completed by a point at infinity, they can be viewed as subtrees of the…
The concepts of orthology, paralogy, and xenology play a key role in molecular evolution. Orthology and paralogy distinguish whether a pair of genes originated by speciation or duplication. The corresponding binary relations on a set of…
A dominating set $S$ of a graph is a metric-locating-dominating set if each vertex of the graph is uniquely distinguished by its distances from the elements of $S$, and the minimum cardinality of such a set is called the…
A connected simple graph is said dual-hamiltonian if its vertex set has a $2$-coloring such that each color class induces a tree. We call such a coloring a hamiltonian coloring. We prove that if $G$ is a graph with a certain type of…
A monotone drawing of a graph G is a straight-line drawing of G such that every pair of vertices is connected by a path that is monotone with respect to some direction. Trees, as a special class of graphs, have been the focus of several…
We consider the cell decomposition of the moduli space of real genus two curves with a marked point on the only real oval. The cells are enumerated by certain graphs with their weights describing the complex structure on a curve. We show…
We extend Schaeffer's bijection between rooted quadrangulations and well-labeled trees to the general case of Eulerian planar maps with prescribed face valences, to obtain a bijection with a new class of labeled trees, which we call…
Frequent pattern mining is a relevant method to analyse structured data, like sequences, trees or graphs. It consists in identifying characteristic substructures of a dataset. This paper deals with a new type of patterns for tree data:…
Reconstructing the evolutionary past of a family of genes is an important aspect of many genomic studies. To help with this, simple operations on a set of sequences called orthology relations may be employed. In addition to being…
Matroid theory is often thought of as a generalization of graph theory. In this paper we propose an analogous correspondence between embedded graphs and delta-matroids. We show that delta-matroids arise as the natural extension of graphic…