Related papers: From Modular Decomposition Trees to Rooted Median …
A retract of a graph $\Gamma$ is an induced subgraph $\Psi$ of $\Gamma$ such that there exists a homomorphism from $\Gamma$ to $\Psi$ whose restriction to $\Psi$ is the identity map. A graph is a core if it has no nontrivial retracts. In…
In this paper we investigate undirected discrete graphical tree models when all the variables in the system are binary, where leaves represent the observable variables and where all the inner nodes are unobserved. A novel approach based on…
A diagram obtained from the Carter diagram $\Gamma$ by adding one root together with its bonds such that the resulting subset of roots is linearly independent is said to be the {\it linkage diagram}. Given a linkage diagram, we associate…
Unrooted phylogenetic networks are graphs used to represent evolutionary relationships. Accurately reconstructing such networks is of great relevance for evolutionary biology. It has recently been conjectured that all phylogenetic networks…
A new general decomposition theory inspired from modular graph decomposition is presented. This helps unifying modular decomposition on different structures, including (but not restricted to) graphs. Moreover, even in the case of graphs,…
We give new decomposition theorems for classes of graphs that can be transduced in first-order logic from classes of sparse graphs -- more precisely, from classes of bounded expansion and from nowhere dense classes. In both cases, the…
Merge trees are a type of topological descriptors that record the connectivity among the sublevel sets of scalar fields. They are among the most widely used topological tools in visualization. In this paper, we are interested in sketching a…
In this paper we resolve the complexity of the isomorphism problem on all but finitely many of the graph classes characterized by two forbidden induced subgraphs. To this end we develop new techniques applicable for the structural and…
Bispanning graphs are undirected graphs with an edge set that can be decomposed into two disjoint spanning trees. The operation of symmetrically swapping two edges between the trees, such that the result is a different pair of disjoint…
A classical result in distance based tree-reconstruction characterizes when for a distance $D$ on some finite set $X$ there exist a uniquely determined dendrogram on $X$ (essentially a rooted tree $T=(V,E)$ with leaf set $X$ and no degree…
For an abelian group $\Gamma$, a $\Gamma$-labelled graph is a graph whose vertices are labelled by elements of $\Gamma$. We prove that a certain collection of edge sets of a $\Gamma$-labelled graph forms a delta-matroid, which we call a…
The theory of sparse structures usually uses tree like structures as building blocks. In the context of sparse/dense dichotomy this role is played by graphs with bounded tree depth. In this paper we survey results related to this concept…
We address the following general question: given a graph class C on which we can solve Maximum Matching in (quasi) linear time, does the same hold true for the class of graphs that can be modularly decomposed into C ? A major difficulty in…
We present a canonical way to decompose finite graphs into highly connected local parts. The decomposition depends only on an integer parameter whose choice sets the intended degree of locality. The global structure of the graph, as…
Compound graphs are networks in which vertices can be grouped into larger subsets, with these subsets capable of further grouping, resulting in a nesting that can be many levels deep. In several applications, including biological workflows,…
We study harmonic morphisms of graphs as a natural discrete analogue of holomorphic maps between Riemann surfaces. We formulate a graph-theoretic analogue of the classical Riemann-Hurwitz formula, study the functorial maps on Jacobians and…
We prove several results showing that every locally finite Borel graph whose large-scale geometry is "tree-like" induces a treeable equivalence relation. In particular, our hypotheses hold if each component of the original graph either has…
A natural generalization of the recognition problem for a geometric graph class is the problem of extending a representation of a subgraph to a representation of the whole graph. A related problem is to find representations for multiple…
We consider arrangements of tropical hyperplanes where the apices of the hyperplanes are taken to infinity in certain directions. Such an arrangement defines a decomposition of Euclidean space where a cell is determined by its `type' data,…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…