Distinguished minimal toplogical lassos
Abstract
A classical result in distance based tree-reconstruction characterizes when for a distance on some finite set there exist a uniquely determined dendrogram on (essentially a rooted tree with leaf set and no degree two vertices but possibly the root and an edge weighting ) such that the distance induced by on is . Moreover, algorithms that quickly reconstruct from in this case are known. However in many areas where dendrograms are being constructed such as Computational Biology not all distances on are always available implying that the sought after dendrogram need not be uniquely determined anymore by the available distances with regards to topology of the underlying tree, edge-weighting, or both. To better understand the structural properties a set has to satisfy to overcome this problem, various types of lassos have been introduced. Here, we focus on the question of when a lasso uniquely determines the topology of a dendrogram's underlying tree, that is, it is a topological lasso for that tree. We show that any set-inclusion minimal topological lasso for such a tree can be transformed into a 'distinguished' minimal topological lasso for , that is, the graph is a claw-free block graph. Furthermore, we characterize such lassos in terms of the novel concept of a cluster marker map for and present results concerning the heritability of such lassos in the context of the subtree and supertree problems.
Cite
@article{arxiv.1308.2537,
title = {Distinguished minimal toplogical lassos},
author = {Katharina T. Huber and George Kettleborough},
journal= {arXiv preprint arXiv:1308.2537},
year = {2013}
}