English

Distinguished minimal toplogical lassos

Populations and Evolution 2013-08-13 v1 Combinatorics

Abstract

A classical result in distance based tree-reconstruction characterizes when for a distance DD on some finite set XX there exist a uniquely determined dendrogram on XX (essentially a rooted tree T=(V,E)T=(V,E) with leaf set XX and no degree two vertices but possibly the root and an edge weighting ω:ER0\omega:E\to \mathbb R_{\geq 0}) such that the distance D(T,ω)D_{(T,\omega)} induced by (T,ω)(T,\omega) on XX is DD. Moreover, algorithms that quickly reconstruct (T,ω)(T,\omega) from DD in this case are known. However in many areas where dendrograms are being constructed such as Computational Biology not all distances on XX are always available implying that the sought after dendrogram need not be uniquely determined anymore by the available distances with regards to topology of the underlying tree, edge-weighting, or both. To better understand the structural properties a set \cL(X2)\cL\subseteq {X\choose 2} has to satisfy to overcome this problem, various types of lassos have been introduced. Here, we focus on the question of when a lasso uniquely determines the topology of a dendrogram's underlying tree, that is, it is a topological lasso for that tree. We show that any set-inclusion minimal topological lasso for such a tree TT can be transformed into a 'distinguished' minimal topological lasso \cL\cL for TT, that is, the graph (X,\cL)(X,\cL) is a claw-free block graph. Furthermore, we characterize such lassos in terms of the novel concept of a cluster marker map for TT and present results concerning the heritability of such lassos in the context of the subtree and supertree problems.

Cite

@article{arxiv.1308.2537,
  title  = {Distinguished minimal toplogical lassos},
  author = {Katharina T. Huber and George Kettleborough},
  journal= {arXiv preprint arXiv:1308.2537},
  year   = {2013}
}
R2 v1 2026-06-22T01:07:55.046Z