Related papers: Arc-Completion of 2-Colored Best Match Graphs to B…
In mixed graphs, there are both directed and undirected edges. An extension of acyclicity to this mixed-graph setting is known as maximally ancestral graphs. This extension is of considerable interest in causal learning in the presence of…
We consider the problem of exact and inexact matching of weighted undirected graphs, in which a bijective correspondence is sought to minimize a quadratic weight disagreement. This computationally challenging problem is often relaxed as a…
For a set of red and blue points in the plane, a minimum bichromatic spanning tree (MinBST) is a shortest spanning tree of the points such that every edge has a red and a blue endpoint. A MinBST can be computed in $O(n\log n)$ time where…
Let G=(V,A) be a vertex-colored arc-weighted directed acyclic graph (DAG) rooted in some vertex r, and let H be its color hierarchy graph, defined as follows: V(H) is the color set C of G, and an arc from color c to color c' exists in H if…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
We define Gaussian graphical models on directed acyclic graphs with coloured vertices and edges, calling them RDAG (restricted directed acyclic graph) models. If two vertices or edges have the same colour, their parameters in the model must…
The existence of a rainbow matching given a minimum color degree, proper coloring, or triangle-free host graph has been studied extensively. This paper, generalizes these problems to edge colored graphs with given total color degree. In…
The Maximum Agreement Forest (Maf) problem is a well-studied problem in evolutionary biology, which asks for a largest common subforest of a given collection of phylogenetic trees with identical leaf label-set. However, the previous work…
Let $P=B\cup R$ be a set of $2n$ points in general position, where $B$ is a set of $n$ blue points and $R$ a set of $n$ red points. A \emph{$BR$-matching} is a plane geometric perfect matching on $P$ such that each edge has one red endpoint…
A local algorithm is a distributed algorithm that completes after a constant number of synchronous communication rounds. We present local approximation algorithms for the minimum dominating set problem and the maximum matching problem in…
We define a search problem on trees that closely captures the backtracking behavior of all current practical graph isomorphism algorithms. Given two trees with colored leaves, the goal is to find two leaves of matching color, one in each of…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…
We consider sequences of finite weighted random graphs that converge locally to unimodular i.i.d. weighted random trees. When the weights are atomless, we prove that the matchings of maximal weight converge locally to a matching on the…
Targeted color-dots with varying shapes and sizes in images are first exhaustively identified, and then their multiscale 2D geometric patterns are extracted for testing spatial uniformness in a progressive fashion. Based on color theory in…
Phylogenetic tree shapes capture fundamental signatures of evolution. We consider ``ranked'' tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant…
Evolutionary scenarios describing the evolution of a family of genes within a collection of species comprise the mapping of the vertices of a gene tree $T$ to vertices and edges of a species tree $S$. The relative timing of the last common…
Phylogenetic trees are leaf-labelled trees, where the leaves correspond to extant species (taxa), and the internal vertices represent ancestral species. The evolutionary history of a set of species can be explained by more than one…
Ordered matchings, defined as graphs with linearly ordered vertices, where each vertex is connected to exactly one edge, play a crucial role in the area of ordered graphs and their homomorphisms. Therefore, we consider related problems from…
We establish the theory of the Dulmage-Mendelsohn decomposition for $b$-matchings. The original Dulmage-Mendelsohn decomposition is a classical canonical decomposition of bipartite graphs, which describes the structures of the maximum…
The Exact Matching problem asks whether a bipartite graph with edges colored red and blue admits a perfect matching with exactly $t$ red edges. Introduced by Papadimitriou and Yannakakis in 1982, the problem has resisted deterministic…