Related papers: Arc-Completion of 2-Colored Best Match Graphs to B…
A matching of a graph is a subset of edges no two of which share a common vertex, and a maximum matching is a matching of maximum cardinality. In a $b$-matching every vertex $v$ has an associated bound $b_v$, and a maximum $b$-matching is a…
One of the most important questions in matroid optimization is to find disjoint common bases of two matroids. The significance of the problem is well-illustrated by the long list of conjectures that can be formulated as special cases.…
In this work we study approximation algorithms for the \textit{Bounded Color Matching} problem (a.k.a. Restricted Matching problem) which is defined as follows: given a graph in which each edge $e$ has a color $c_e$ and a profit $p_e \in…
Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…
Following the recent paper which initiated the study of colour isomorphism problems for complete graphs, we obtain upper bounds for $f_2(n,H)$ for a family of graphs $H$ obtained as the $K_0$-th rooted power of a balanced rooted tree for…
Phylogenetic trees play a key role in the reconstruction of evolutionary relationships. Typically, they are derived from aligned sequence data (like DNA, RNA, or proteins) by using optimization criteria like, e.g., maximum parsimony (MP).…
Evolutionary models used for describing molecular sequence variation suppose that at a non-recombining genomic segment, sequences share ancestry that can be represented as a genealogy--a rooted, binary, timed tree, with tips corresponding…
In the present paper, we study algorithmic questions for the arc-intersection graph of directed paths on a tree. Such graphs are known to be perfect (proved by Monma and Wei in 1986). We present faster algorithms than all previously known…
The binary perfect phylogeny model is too restrictive to model biological events such as back mutations. In this paper we consider a natural generalization of the model that allows a special type of back mutation. We investigate the problem…
Phylogenetic networks are a generalization of evolutionary trees that are used by biologists to represent the evolution of organisms which have undergone reticulate evolution. Essentially, a phylogenetic network is a directed acyclic graph…
Monadic second order logic can be used to express many classical notions of sets of vertices of a graph as for instance: dominating sets, induced matchings, perfect codes, independent sets or irredundant sets. Bounds on the number of sets…
Maximal planar graph refers to the planar graph with the most edges, which means no more edges can be added so that the resulting graph is still planar. The Four-Color Conjecture says that every planar graph without loops is 4-colorable.…
We show that the edges of any graph $G$ containing two edge-disjoint spanning trees can be blue/red coloured so that the blue and red graphs are connected and the blue and red degrees at each vertex differ by at most four. This improves a…
In preference modelling, it is essential to determine the number of questions and their arrangements to ask from the decision maker. We focus on incomplete pairwise comparison matrices, and provide the optimal filling in patterns, which…
Tanglegrams are drawings of two rooted binary phylogenetic trees and a matching between their leaf sets. The trees are drawn crossing-free on opposite sides with their leaf sets facing each other on two vertical lines. Instead of minimizing…
Given an edge-colored graph, the Maximum Rainbow Matching problem asks for a maximum-cardinality matching of the graph that contains at most one edge from each color. We provide the following complexity dichotomy for this problem based on…
We present new and improved fixed-parameter algorithms for computing maximum agreement forests (MAFs) of pairs of rooted binary phylogenetic trees. The size of such a forest for two trees corresponds to their subtree prune-and-regraft…
We study conditions under which an edge-coloured hypergraph has a particular substructure that contains more than the trivially guaranteed number of monochromatic edges. Our main result solves this problem for perfect matchings under…
An edge-colouring of a graph $G$ is said to be colour-balanced if there are equally many edges of each available colour. We are interested in finding a colour-balanced perfect matching within a colour-balanced clique $K_{2nk}$ with a…
Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…