Related papers: Arc-Completion of 2-Colored Best Match Graphs to B…
The MEG (minimum equivalent graph) problem is, given a directed graph, to find a small subset of the edges that maintains all reachability relations between nodes. The problem is NP-hard. This paper gives a proof that, for graphs where each…
In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…
An optimal algorithm is presented about Conflict-Free Coloring for connected subgraphs of tree of rings. Suppose the number of the rings in the tree is |T| and the maximum length of rings is |R|. A presented algorithm in [1] for a Tree of…
A finitely presented Bestvina-Brady group (BBG) admits a presentation involving only commutators. We show that if a graph admits a certain type of spanning trees, then the associated BBG is a right-angled Artin group (RAAG). As an…
We characterize the compatibility of a collection of unrooted phylogenetic trees as a question of determining whether a graph derived from these trees --- the display graph --- has a specific kind of triangulation, which we call legal. Our…
Given a graph and a root, the Maximum Bounded Rooted-Tree Packing (MBRTP) problem aims at finding K rooted-trees that span the largest subset of vertices, when each vertex has a limited outdegree. This problem is motivated by peer-to-peer…
In a simple, undirected graph G, an edge 2-coloring is a coloring of the edges such that no vertex is incident to edges with more than 2 distinct colors. The problem maximum edge 2-coloring (ME2C) is to find an edge 2-coloring in a graph G…
In the Coloured Clustering problem, we wish to colour vertices of an edge coloured graph to produce as many stable edges as possible, i.e., edges with the same colour as their ends. In this paper, we reveal that the problem is in fact a…
The main result of the paper is motivated by the following two, apparently unrelated graph optimization problems: (A) as an extension of Edmonds' disjoint branchings theorem, characterize digraphs comprising $k$ disjoint branchings $B_i$…
A matching in a graph is uniquely restricted if no other matching covers exactly the same set of vertices. This notion was defined by Golumbic, Hirst, and Lewenstein and studied in a number of articles. Our contribution is twofold. We…
Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…
Many of the commonly used methods for orthology detection start from mutually most similar pairs of genes (reciprocal best hits) as an approximation for evolutionary most closely related pairs of genes (reciprocal best matches). This…
A b-coloring of the vertices of a graph is a proper coloring where each color class contains a vertex which is adjacent to at least one vertex in each other color class. The b-chromatic number of $G$ is the maximum integer $b(G)$ for which…
In this paper, we consider a number of results and seven conjectures on properly edge-coloured (PC) paths and cycles in edge-coloured multigraphs. We overview some known results and prove new ones. In particular, we consider a family of…
The reconfiguration graph $\mathcal{C}_k(G)$ for the $k$-colourings of a graph $G$ has a vertex for each proper $k$-colouring of $G$, and two vertices of $\mathcal{C}_k(G)$ are adjacent precisely when those $k$-colourings differ on a single…
We show that if a multigraph $G$ with maximum edge-multiplicity of at most $\frac{\sqrt{n}}{\log^2 n}$, is edge-coloured by $n$ colours such that each colour class is a disjoint union of cliques with at least $2n + o(n)$ vertices, then it…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
For a list-assignment $L$, the reconfiguration graph $C_L(G)$ of a graph $G$ is the graph whose vertices are proper $L$-colorings of $G$ and whose edges link two colorings that differ on only one vertex. If $|L(v)| \ge d(v) + 2$ for every…
Drawings of non-planar graphs always result in edge crossings. When there are many edges crossing at small angles, it is often difficult to follow these edges, because of the multiple visual paths resulted from the crossings that slow down…
Let $G$ be an edge-coloured graph. A rainbow subgraph in $G$ is a subgraph such that its edges have distinct colours. The minimum colour degree $\delta^c(G)$ of $G$ is the smallest number of distinct colours on the edges incident with a…