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A long-standing conjecture of Berge suggests that every bridgeless cubic graph can be expressed as a union of at most five perfect matchings. This conjecture trivially holds for $3$-edge-colourable cubic graphs, but remains widely open for…
In evolutionary biology, networks are becoming increasingly used to represent evolutionary histories for species that have undergone non-treelike or reticulate evolution. Such networks are essentially directed acyclic graphs with a leaf set…
This paper establishes a bridge between linear logic and mainstream graph theory, building on previous work by Retor\'e (2003). We show that the problem of correctness for MLL+Mix proof nets is equivalent to the problem of uniqueness of a…
For the set of graphs with a given degree sequence, consisting of any number of $2's$ and $1's$, and its subset of bipartite graphs, we characterize the optimal graphs who maximize and minimize the number of $m$-matchings. We find the…
Two independent edges in ordered graphs can be nested, crossing or separated. These relations define six types of subgraphs, depending on which relations are forbidden. We refine a remark by Erd\H{o}s and Rado that every 2-coloring of the…
The (Perfect) Matching Cut problem is to decide if a graph $G$ has a (perfect) matching cut, i.e., a (perfect) matching that is also an edge cut of $G$. Both Matching Cut and Perfect Matching Cut are known to be NP-complete. A perfect…
There are multiple factors which can cause the phylogenetic inference process to produce two or more conflicting hypotheses of the evolutionary history of a set X of biological entities. That is: phylogenetic trees with the same set of leaf…
We investigate the tractability of a simple fusion of two fundamental structures on graphs, a spanning tree and a perfect matching. Specifically, we consider the following problem: given an edge-weighted graph, find a minimum-weight…
We study the rainbow matching (RM) problem: given an edge-colored graph, find a maximum matching with at most one edge of each color. Rainbow matchings correspond to stable sets in the \emph{augmented} graph $H$ obtained from the line graph…
We consider vertex coloring of an acyclic digraph $\Gdag$ in such a way that two vertices which have a common ancestor in $\Gdag$ receive distinct colors. Such colorings arise in a natural way when bounding space for various genetic data…
A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…
A 2-edge-coloured graph $G$ is called {\bf locally complete} if for each vertex $v$, the vertices adjacent to $v$ through edges of the same colour induce a complete subgraph in $G$. Locally complete 2-edge-coloured graphs have nice…
We analyse a maximum-likelihood approach for combining phylogenetic trees into a larger `supertree'. This is based on a simple exponential model of phylogenetic error, which ensures that ML supertrees have a simple combinatorial description…
Temporal sequences of terrains arise in various application areas. To analyze them efficiently, one generally needs a suitable abstraction of the data as well as a method to compare and match them over time. In this paper we consider merge…
In the Minimum Consistent Subset (MCS) problem, we are presented with a connected simple undirected graph $G=(V,E)$, consisting of a vertex set $V$ of size $n$ and an edge set $E$. Each vertex in $V$ is assigned a color from the set…
We study minimal vertex covers and maximal matchings on trees. We pay special attention to the corresponding backbones i.e. these vertices that are occupied and those that are empty in every minimal vertex cover (resp. these egdes that are…
The maximum genus $\gamma_M(G)$ of a graph G is the largest genus of an orientable surface into which G has a cellular embedding. Combinatorially, it coincides with the maximum number of disjoint pairs of adjacent edges of G whose removal…
A graph/multigraph $G$ is locally irregular if endvertices of every its edge possess different degrees. The locally irregular edge coloring of $G$ is its edge coloring with the property that every color induces a locally irregular…
Unrooted phylogenetic networks are graphs used to represent evolutionary relationships. Accurately reconstructing such networks is of great relevance for evolutionary biology. It has recently been conjectured that all phylogenetic networks…
An edge-colored graph $G$ is \emph{conflict-free connected} if any two of its vertices are connected by a path, which contains a color used on exactly one of its edges. The \emph{conflict-free connection number} of a connected graph $G$,…