Related papers: Arc-Completion of 2-Colored Best Match Graphs to B…
A subset $M$ of the edges of a graph $G$ is a matching if no two edges in $M$ are incident. A maximal matching is a matching that is not contained in a larger matching. A subset $S$ of vertices of a graph $G$ with no isolated vertices is a…
We study two measures of uncolourability of cubic graphs, their colouring defect and perfect matching index. The colouring defect of a cubic graph $G$ is the smallest number of edges left uncovered by three perfect matchings; the perfect…
Given a pair of graphs with the same number of vertices, the inexact graph matching problem consists in finding a correspondence between the vertices of these graphs that minimizes the total number of induced edge disagreements. We study…
A tree-coloring of a maximal planar graph is a proper vertex $4$-coloring such that every bichromatic subgraph, induced by this coloring, is a tree. A maximal planar graph $G$ is tree-colorable if $G$ has a tree-coloring. In this article,…
The study of genetic map linearization leads to a combinatorial hard problem, called the {\em minimum breakpoint linearization} (MBL) problem. It is aimed at finding a linearization of a partial order which attains the minimum breakpoint…
This paper categorizes the parameterized complexity of the algorithmic problems Perfect Phylogeny and Triangulating Colored Graphs when parameterized by the number of genes and colors, respectively. We show that they are complete for the…
Monte Carlo tree search (MCTS) has received considerable interest due to its spectacular success in the difficult problem of computer Go and also proved beneficial in a range of other domains. A major issue that has received little…
Subgraph complementation is an operation that toggles all adjacencies inside a selected vertex set. Given a graph \(G\) and a target class \(\mathcal{C}\), the Minimum Subgraph Complementation problem asks for a minimum-size vertex set…
In this paper we investigate an extremal problem on binary phylogenetic trees. Given two such trees $T_1$ and $T_2$, both with leaf-set ${1,2,...,n}$, we are interested in the size of the largest subset $S \subseteq {1,2,...,n}$ of leaves…
A vertex colouring is called a \emph{parity vertex colouring} if every path in $G$ contains an odd number of occurrences of some colour. Let $\chi_{p}(G)$ be the minimal number of colours in a parity vertex colouring of $G$. We show that…
A well-studied coloring problem is to assign colors to the edges of a graph $G$ so that, for every pair of vertices, all edges of at least one shortest path between them receive different colors. The minimum number of colors necessary in…
An $r$-matching in a graph $G$ is a collection of edges in $G$ such that the distance between any two edges is at least $r$. A $2$-matching is also called an induced matching. In this paper, we estimate the maximum number of $r$-matchings…
Several implicit methods to infer Horizontal Gene Transfer (HGT) focus on pairs of genes that have diverged only after the divergence of the two species in which the genes reside. This situation defines the edge set of a graph, the…
A binary phylogenetic network may or may not be obtainable from a tree by the addition of directed edges (arcs) between tree arcs. Here, we establish a precise and easily tested criterion (based on `2-SAT') that efficiently determines…
A graph is said to be nearly complete bipartite if it can be obtained by deleting a set of independent edges from a complete bipartite graph. The nonorientable genus of such graphs is known except in a few cases where the sizes of the…
A coloring of a tree is convex if the vertices that pertain to any color induce a connected subtree; a partial coloring (which assigns colors to some of the vertices) is convex if it can be completed to a convex (total) coloring. Convex…
We consider a framework for clustering edge-colored hypergraphs, where the goal is to cluster (equivalently, to color) objects based on the primary type of multiway interactions they participate in. One well-studied objective is to color…
A graph is called matching covered if for its every edge there is a maximum matching containing it. It is shown that minimal matching covered graphs contain a perfect matching.
Let $G=(V,E)$ be a vertex-colored graph, where $C$ is the set of colors used to color $V$. The Graph Motif (or GM) problem takes as input $G$, a multiset $M$ of colors built from $C$, and asks whether there is a subset $S\subseteq V$ such…
We prove a tropical analogue of the theorem of Hurwitz: a leafless metric graph of genus $g \ge 2$ has at most $12$ automorphisms when $g = 2$; $2^g g!$ automorphisms when $g \ge 3$. These inequalities are optimal; for each genus, we give…