Related papers: Tied pseudo links \& Pseudo knotoids
Dual graphs have been applied to model RNA secondary structures with pseudoknots, or intertwined base pairs. In previous works, a linear-time algorithm was introduced to partition dual graphs into maximally connected components called…
This paper introduces a new algebra, the crossing algebra, that is applied to count the number of components for arborescent knots, links, tangles or states (of a state polynomial expansion such as the Kauffman bracket). This algebra is…
In this paper we show how to realize all knot (and link) types as C^{2} smooth curves of constant curvature. Our proof is constructive: we build the knots with copies of a fixed finite number of "building blocks" that are particular…
In this paper we use artificial neural networks to predict and help compute the values of certain knot invariants. In particular, we show that neural networks are able to predict when a knot is quasipositive with a high degree of accuracy.…
The notion of Vassiliev algebra in case of hanlebodies is developed. The analogues of the results of John Baez for links in handlebodies are proved. That means that there exists a one-to-one correspondence between the special class of…
We introduce a new numerical invariant of knots and links from the descending diagrams. It is considered to live between the unknotting number and the bridge number.
If the tunnel number of a link $K$ is denoted $t(K)$, a pair of knots $K_1,K_2$ is said to be subadditive if $t(K_1)+t(K_2)>t(K_1 # K_2)$. We construct new examples of subadditive links.
In this paper we consider the problem of RNA folding with pseudoknots. We use a graphical representation in which the secondary structures are described by planar diagrams. Pseudoknots are identified as non-planar diagrams. We analyze the…
A virtual knot, which is one of generalizations of knots in $\mathbb{R}^{3}$ (or $S^{3}$), is, roughly speaking, an embedded circle in thickened surface $S_{g} \times I$. In this paper we will discuss about knots in 3 dimensional $S_{g}…
We develop a calculus for diagrams of knotted objects. We define Arrow presentations, which encode the crossing informations of a diagram into arrows in a way somewhat similar to Gauss diagrams, and more generally w-tree presentations,…
We study petal diagrams of knots, which provide a method of describing knots in terms of permutations in a symmetric group $S_{2n+1}$. We define two classes of moves on such permutations, called trivial petal additions and crossing…
This paper is a survey of knot theory and invariants of knots and links from the point of view of categories of diagrams. The topics range from foundations of knot theory to virtual knot theory and topological quantum field theory.
We consider a natural model of random knotting- choose a knot diagram at random from the finite set of diagrams with n crossings. We tabulate diagrams with 10 and fewer crossings and classify the diagrams by knot type, allowing us to…
Let $\phi : S^1\times D^2\to S^1$ be the natural projection. An oriented knot $K\hookrightarrow V = S^1\times D^2$ is called an almost closed braid if the restriction of $\phi$ to K has exactly two (non-degenerate) critical points (and K is…
We proposed an entangled multi-knot lattice model to explore the exotic statistics of anyon. This knot lattice model bears abelian and non-abelian anyons as well as integral and fractional filling states that is similar to quantum Hall…
We give a brief survey of some known results on intrinsically linked or knotted graphs.
The notion of a braided chord diagram is introduced and studied. An equivalence relation is given which identifies all braidings of a fixed chord diagram. It is shown that finite-type invariants are stratified by braid index for knots which…
In the Khovanov homology of links, presence of $\mathbb{Z}_2$-torsion is a very common phenomenon. Finite number of examples of knots with $\mathbb{Z}_n$-torsion for $n>2$ were also known, none for $n>8$. In this paper, we prove that there…
In this paper we introduce a Jones-type invariant for singular knots, using a Markov trace on the Yokonuma--Hecke algebras ${\rm Y}_{d,n}(u)$ and the theory of singular braids. The Yokonuma--Hecke algebras have a natural topological…
A previous work of A. Conway and the author introduced $L^2$-Burau maps of braids, which are generalizations of the Burau representation whose coefficients live in a more general group ring than the one of Laurent polynomials. This same…