Related papers: A Complexity Dichotomy for Permutation Pattern Mat…
A geometric grid class consists of those permutations that can be drawn on a specified set of line segments of slope \pm1 arranged in a rectangular pattern governed by a matrix. Using a mixture of geometric and language theoretic methods,…
We prove necessary and sufficient conditions on a family of (generalised) gridding matrices to determine when the corresponding permutation classes are partially well-ordered. One direction requires an application of Higman's Theorem and…
Correspondence homomorphisms are both a generalization of standard homomorphisms and a generalization of correspondence colourings. For a fixed target graph $H$, the problem is to decide whether an input graph $G$, with each edge labeled by…
A trigraph is a graph where each pair of vertices is labelled either 0 (a non-arc), 1 (an arc) or $\star$ (both an arc and a non-arc). In a series of papers, Hell and co-authors proposed to study the complexity of homomorphisms from graphs…
Although the CSP (constraint satisfaction problem) is NP-complete, even in the case when all constraints are binary, certain classes of instances are tractable. We study classes of instances defined by excluding subproblems. This approach…
In this article, we describe an algorithm to determine whether a permutation class C given by a finite basis B of excluded patterns contains a finite number of simple permutations. This is a continuation of the work initiated in [Brignall,…
In recent years, much attention has been placed on the complexity of graph homomorphism problems when the input is restricted to ${\mathbb P}_k$-free and ${\mathbb P}_k$-subgraph-free graphs. We consider the directed version of this…
This article presents a methodology that automatically derives a combinatorial specification for a permutation class C, given its basis B of excluded patterns and the set of simple permutations in C, when these sets are both finite. This is…
In this paper we study the parameterized complexity of two well-known permutation group problems which are NP-complete. 1. Given a permutation group G=<S>, subgroup of $S_n$, and a parameter $k$, find a permutation $\pi$ in G such that…
We study a family of sorting match puzzles on grids, which we call permutation match puzzles. In this puzzle, each row and column of a $n \times n$ grid is labeled with an ordering constraint -- ascending (A) or descending (D) -- and the…
The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…
A polynomial Turing compression (PTC) for a parameterized problem $L$ is a polynomial time Turing machine that has access to an oracle for a problem $L'$ such that a polynomial in the input parameter bounds each query. Meanwhile, a…
Trigraph list homomorphism problems (also known as list matrix partition problems) have generated recent interest, partly because there are concrete problems that are not known to be polynomial time solvable or NP-complete. Thus while…
The Dichotomy Conjecture for constraint satisfaction problems (CSPs) states that every CSP is in P or is NP-complete (Feder-Vardi, 1993). It has been verified for conservative problems (also known as list homomorphism problems) by A.…
We study the complexity of constraint satisfaction problems for templates $\Gamma$ that are first-order definable in $(\Bbb Z; succ)$, the integers with the successor relation. Assuming a widely believed conjecture from finite domain…
The binary perfect phylogeny model is too restrictive to model biological events such as back mutations. In this paper we consider a natural generalization of the model that allows a special type of back mutation. We investigate the problem…
The perfect phylogeny mixture (PPM) model is useful due to its simplicity and applicability in scenarios where mutations can be assumed to accumulate monotonically over time. It is the underlying model in many tools that have been used, for…
In this note we show that pattern matching in permutations is polynomial time reducible to pattern matching in set partitions. In particular, pattern matching in set partitions is NP-Complete.
A monotone grid class is a permutation class (i.e., a downset of permutations under the containment order) defined by local monotonicity conditions. We give a simplified proof of a result of Murphy and Vatter that monotone grid classes of…
The Promise Constraint Satisfaction Problem (PCSP for short) is a generalization of the well-studied Constraint Satisfaction Problem (CSP). The PCSP has its roots in such classic problems as the Approximate Graph Coloring and the…