Related papers: A Complexity Dichotomy for Permutation Pattern Mat…
A pattern p (i.e., a string of variables and terminals) matches a word w, if w can be obtained by uniformly replacing the variables of p by terminal words. The respective matching problem, i.e., deciding whether or not a given pattern…
We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the given pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation…
The perfect phylogeny is one of the most used models in different areas of computational biology. In this paper we consider the problem of the Persistent Perfect Phylogeny (referred as P-PP) recently introduced to extend the perfect…
In this article, we study the problem of finding the longest common separable pattern between several permutations. We give a polynomial-time algorithm when the number of input permutations is fixed and show that the problem is NP-hard for…
The complexity of graph homomorphisms has been a subject of intense study [11, 12, 4, 42, 21, 17, 6, 20]. The partition function $Z_{\mathbf A}(\cdot)$ of graph homomorphism is defined by a symmetric matrix $\mathbf A$ over $\mathbb C$. We…
For a (possibly infinite) fixed family of graphs F, we say that a graph G overlays F on a hypergraph H if V(H) is equal to V(G) and the subgraph of G induced by every hyperedge of H contains some member of F as a spanning subgraph.While it…
In a graph, a matching cut is an edge cut that is a matching. Matching Cut is the problem of deciding whether or not a given graph has a matching cut, which is known to be NP-complete even when restricted to bipartite graphs. It has been…
In a graph, a (perfect) matching cut is an edge cut that is a (perfect) matching. Matching Cut (MC), respectively, Perfect Matching Cut (PMC), is the problem of deciding whether a given graph has a matching cut, respectively, a perfect…
Geometric grid classes of permutations have proven to be key in investigations of classical permutation pattern classes. By considering the representation of gridded permutations as words in a trace monoid, we prove that every geometric…
Graph matching refers to finding node correspondence between graphs, such that the corresponding node and edge's affinity can be maximized. In addition with its NP-completeness nature, another important challenge is effective modeling of…
We address the following general question: given a graph class C on which we can solve Maximum Matching in (quasi) linear time, does the same hold true for the class of graphs that can be modularly decomposed into C ? A major difficulty in…
For a finite relational structure A, let CSP(A) denote the CSP instances whose constraint relations are taken from A. The resulting family of problems CSP(A) has been considered heavily in a variety of computational contexts. In this…
The Constraint Satisfaction Problem (CSP) is a problem of computing a homomorphism $\mathbf{R}\to \mathbf{\Gamma}$ between two relational structures, where $\mathbf{R}$ is defined over a domain $V$ and $\mathbf{\Gamma}$ is defined over a…
In a graph, a perfect matching cut is an edge cut that is a perfect matching. Perfect Matching Cut (PMC) is the problem of deciding whether a given graph has a perfect matching cut, and is known to be NP-complete. We revisit the problem and…
Permutation patterns and pattern avoidance are central, well-studied concepts in combinatorics and computer science. Given two permutations $\tau$ and $\pi$, the pattern matching problem (PPM) asks whether $\tau$ contains $\pi$. This…
Many natural combinatorial problems can be expressed as constraint satisfaction problems. This class of problems is known to be NP-complete in general, but certain restrictions on the form of the constraints can ensure tractability. The…
We study the problem of query evaluation on probabilistic graphs, namely, tuple-independent probabilistic databases over signatures of arity two. We focus on the class of queries closed under homomorphisms, or, equivalently, the infinite…
A matching is a set of edges in a graph with no common endpoint. A matching M is called acyclic if the induced subgraph on the endpoints of the edges in M is acyclic. Given a graph G and an integer k, Acyclic Matching Problem seeks for an…
The embedding problem is to decide, given an ordered pair of structures, whether or not there is an injective homomorphism from the first structure to the second. We study this problem using an established perspective in parameterized…