Related papers: A Complexity Dichotomy for Permutation Pattern Mat…
In the last years, different types of patterns in permutations have been studied: vincular, bivincular and mesh patterns, just to name a few. Every type of permutation pattern naturally defines a corresponding computational problem: Given a…
A classic result due to Schaefer (1978) classifies all constraint satisfaction problems (CSPs) over the Boolean domain as being either in $\mathsf{P}$ or $\mathsf{NP}$-hard. This paper considers a promise-problem variant of CSPs called…
Given a symmetric D*D matrix M over {0,1,*}, a list M-partition of a graph G is a partition of G's vertices into D parts associated with the rows of M. The part of each vertex is chosen from a given list so that no edge of G maps to a 0 in…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…
The Permutation Pattern Matching problem, asking whether a pattern permutation $\pi$ is contained in a permutation $\tau$, is known to be NP-complete. In this paper we present two polynomial time algorithms for special cases. The first…
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a…
We consider the class of conditional graph patterns (\emph{CGPs}) that allow user to query data graphs with complex patterns that contain negation and predicates. To overcome the prohibitive cost of subgraph isomorphism, we consider…
A c-coloring of G(n,m)=n x m is a mapping of G(n,m) into {1,...,c} such that no four corners forming a rectangle have the same color. In 2009 a challenge was proposed via the internet to find a 4-coloring of G(17,17). This attracted…
We characterize the complexity of the PATS problem for patterns of fixed height and color count in variants of the model where seed glues are either chosen or fixed and identical (so-called non-uniform and uniform variants). We prove that…
We study homomorphism polynomials, which are polynomials that enumerate all homomorphisms from a pattern graph $H$ to $n$-vertex graphs. These polynomials have received a lot of attention recently for their crucial role in several new…
A homomorphism from a graph $G$ to a graph $H$ is an edge-preserving mapping from $V(G)$ to $V(H)$. For a fixed graph $H$, in the list homomorphism problem, denoted by LHom($H$), we are given a graph $G$, whose every vertex $v$ is equipped…
We study the complexity of the Distributed Constraint Satisfaction Problem (DCSP) on a synchronous, anonymous network from a theoretical standpoint. In this setting, variables and constraints are controlled by agents which communicate with…
In the problem of $\texttt{Generalised Pattern Matching}\ (\texttt{GPM})$ [STOC'94, Muthukrishnan and Palem], we are given a text $T$ of length $n$ over an alphabet $\Sigma_T$, a pattern $P$ of length $m$ over an alphabet $\Sigma_P$, and a…
Graph pattern matching is a routine process for a wide variety of applications such as social network analysis. It is typically defined in terms of subgraph isomorphism which is NP-Complete. To lower its complexity, many extensions of graph…
Genome rearrangements are events in which large blocks of DNA exchange pieces during evolution. The analysis of such events is a tool for understanding evolutionary genomics, based on finding the minimum number of rearrangements to…
A well-studied geometric object in combinatorial optimization is the perfect matching polytope of a graph $G$. In any investigation concerning the perfect matching polytope, one may assume that $G$ is matching covered --- that is, it is a…
Parameterized complexity theory has enabled a refined classification of the difficulty of NP-hard optimization problems on graphs with respect to key structural properties, and so to a better understanding of their true difficulties. More…
We prove a complexity dichotomy theorem for the six-vertex model. For every setting of the parameters of the model, we prove that computing the partition function is either solvable in polynomial time or #P-hard. The dichotomy criterion is…
For any particular class of graphs, algorithms for computational problems restricted to the class often rely on structural properties that depend on the specific problem at hand. This begs the question if a large set of such results can be…
Hybrid logic with binders is an expressive specification language. Its satisfiability problem is undecidable in general. If frames are restricted to N or general linear orders, then satisfiability is known to be decidable, but of…