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The mathematical formalisms used to model biological systems induce both latent and ambiguous assumptions that can limit or distort their representational capabilities. Developing formalisms that can represent systems more precisely is…

Quantitative Methods · Quantitative Biology 2026-05-25 Léo Diaz , Sean T. Vittadello , Michael P. H. Stumpf

This paper discusses the concept of model-driven software engineering applied to the Grid application domain. As an extension to this concept, the approach described here, attempts to combine both formal architecture-centric and…

Software Engineering · Computer Science 2007-05-23 David Manset , Herve Verjus , Richard McClatchey , Flavio Oquendo

Graphical models can represent a multivariate distribution in a convenient and accessible form as a graph. Causal models can be viewed as a special class of graphical models that not only represent the distribution of the observed system…

Methodology · Statistics 2017-06-29 Christina Heinze-Deml , Marloes H. Maathuis , Nicolai Meinshausen

Sequences of correlated binary patterns can represent many time-series data including text, movies, and biological signals. These patterns may be described by weighted combinations of a few dominant structures that underpin specific…

Machine Learning · Statistics 2019-03-29 Jimmy Gaudreault , Arunabh Saxena , Hideaki Shimazaki

System engineering has been shifting from document-centric to model-based approaches, where assets are becoming more and more digital. Although digitisation conveys several benefits, it also brings several concerns (e.g., storage and…

Software Engineering · Computer Science 2025-12-11 Arkadiusz Ryś , Lucas Lima , Joeri Exelmans , Dennis Janssens , Hans Vangheluwe

Here we introduce Partially Observed Structural Causal Models (POSCMs) that formalize causal systems where latent contexts co-determine both the interaction structure and downstream mechanisms on observed variables. POSCMs provide an…

Machine Learning · Computer Science 2026-05-06 Turan Orujlu , Jordan Matelsky , Martin V. Butz , Charley M. Wu , Konrad P. Kording

This paper introduces a novel architecture of distributed systems--called framed distributed system, or FDS--that braces a given system via a built-in virtual framework that controls the flow of messages between system components and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-21 Naftaly Minsky

Recommendation systems focus on helping users find items of interest in the situations of information overload, where users' preferences are typically estimated by the past observed behaviors. In contrast, conversational recommendation…

Computation and Language · Computer Science 2022-03-29 Ting-Chun Wang , Shang-Yu Su , Yun-Nung Chen

The advent of data-driven science in the 21st century brought about the need for well-organized structured data and associated infrastructure able to facilitate the applications of Artificial Intelligence and Machine Learning. We present an…

Databases · Computer Science 2022-03-03 Alexander Zech , Timur Bazhirov

The modelling and analysis of biological systems has deep roots in Mathematics, specifically in the field of Ordinary Differential Equations. Alternative approaches based on formal calculi, often derived from process algebras or term…

Linux container technologies such as Docker and Singularity offer encapsulated environments for easy execution of software. In high performance computing, this is especially important for evolving and complex software stacks with…

Operating Systems · Computer Science 2022-12-15 Vanessa Sochat , Matthieu Muffato , Audrey Stott , Marco De La Pierre , Georgia Stuart

Virtualization technologies have evolved along with the development of computational environments since virtualization offered needed features at that time such as isolation, accountability, resource allocation, resource fair sharing and so…

Operating Systems · Computer Science 2017-10-02 Carlos Arango , Rémy Dernat , John Sanabria

Container technologies such as Docker have become a crucial component of many software industry practices especially those pertaining to reproducibility and portability. The containerization philosophy has influenced the scientific…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-08-05 Peter Z. Vaillancourt , J. Eric Coulter , Richard Knepper , Brandon Barker

Data constraints are fundamental for practical data modelling, and a verifiable conformance of a data instance to a safety-critical constraint (satisfaction relation) is a corner-stone of safety assurance. Diagrammatic constraints are…

Logic in Computer Science · Computer Science 2023-06-29 Zinovy Diskin

Smart modular freight containers -- as propagated in the Physical Internet paradigm -- are equipped with sensors, data storage capability and intelligence that enable them to route themselves from origin to destination without manual…

Artificial Intelligence · Computer Science 2020-05-05 Wouter van Heeswijk

Establishing appropriate mathematical models for complex systems in natural phenomena not only helps deepen our understanding of nature but can also be used for state estimation and prediction. However, the extreme complexity of natural…

Machine Learning · Computer Science 2024-03-27 Cheng Fang , Jinqiao Duan

This report proposes a formal specification for organising all buildings, streets and administrative areas in the world into a hierarchical space-partitioning tree using data from OpenStreetMap. This hierarchical structure is encoded into a…

Logic in Computer Science · Computer Science 2025-08-04 Kang Rong Roy Ang

Resource management is the principal factor to fully utilize the potential of Edge/Fog computing to execute real-time and critical IoT applications. Although some resource management frameworks exist, the majority are not designed based on…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-11 Zhiyu Wang , Mohammad Goudarzi , Jagannath Aryal , Rajkumar Buyya

The contemporary development of hardware components is a prerequisite for increasing the concentration of computing power. System software is developing at a much slower pace. To use available resources efficiently modeling is required.…

Operating Systems · Computer Science 2014-02-21 Asen Petkov Iliev

This short paper examines diagrams describing neural network systems in academic conference proceedings. Many aspects of scholarly communication are controlled, particularly with relation to text and formatting, but often diagrams are not…

Human-Computer Interaction · Computer Science 2021-05-03 Guy Clarke Marshall , Caroline Jay , Andre Freitas
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