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We present a novel method for the interactive construction and rendering of extremely large molecular scenes, capable of representing multiple biological cells in atomistic detail. Our method is tailored for scenes, which are procedurally…

Graphics · Computer Science 2024-06-11 Ruwayda Alharbi , Ondřej Strnad , Tobias Klein , Ivan Viola

System architecture diagrams play an essential role in understanding system architecture. They encourage more active discussion among participants and make it easier to recall system details. However, system architecture diagrams often…

Software Engineering · Computer Science 2022-10-24 Jalves Nicacio , Fabio Petrillo

We present the architecture of a cloud native version of IBM Streams, with Kubernetes as our target platform. Streams is a general purpose streaming system with its own platform for managing applications and the compute clusters that…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-02 Scott Schneider , Xavier Guerin , Shaohan Hu , Kun-Lung Wu

As Clouds are complex, large-scale, and heterogeneous distributed systems, management of their resources is a challenging task. They need automated and integrated intelligent strategies for provisioning of resources to offer services that…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-17 Rajkumar Buyya , Rodrigo N. Calheiros , Xiaorong Li

High dimensional and heterogeneous count data are collected in various applied fields. In this paper, we look closely at high-resolution sequencing data on the microbiome, which have enabled researchers to study the genomes of entire…

Methodology · Statistics 2024-01-12 Veronica Vinciotti , Pariya Behrouzi , Reza Mohammadi

At the intersection of computation and cognitive science, graph theory is utilized as a formalized description of complex relationships and structures. Traditional graph models are often static, lacking dynamic and autonomous behavioral…

Neurons and Cognition · Quantitative Biology 2024-06-11 Hui Wei , Chenyue Feng , Jianning Zhang

Cloud robotics has emerged as a promising technology for robotics applications due to its advantages of offloading computationally intensive tasks, facilitating data sharing, and enhancing robot coordination. However, integrating cloud…

Increasing popularity of the serverless computing approach has led to the emergence of new cloud infrastructures working in Container-as-a-Service (CaaS) model like AWS Fargate, Google Cloud Run, or Azure Container Instances. They introduce…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-23 Krzysztof Burkat , Maciej Pawlik , Bartosz Balis , Maciej Malawski , Karan Vahi , Mats Rynge , Rafael Ferreira da Silva , Ewa Deelman

A generic architecture for a class of distributed robotic systems is presented. The architecture supports openness and heterogeneity, i.e. heterogeneous components may be joined and removed from the systems without affecting its basic…

Robotics · Computer Science 2017-09-15 Kamil Skarzynski , Marcin Stepniak , Waldemar Bartyna , Stanislaw Ambroszkiewicz

Coherent structures form spontaneously in nonlinear spatiotemporal systems and are found at all spatial scales in natural phenomena from laboratory hydrodynamic flows and chemical reactions to ocean, atmosphere, and planetary climate…

Statistical Mechanics · Physics 2018-08-15 Adam Rupe , James P. Crutchfield

Structural causal models describe how the components of a robotic system interact. They provide both structural and functional information about the relationships that are present in the system. The structural information outlines the…

Robotics · Computer Science 2025-08-12 Alejandro Murillo-Gonzalez , Junhong Xu , Lantao Liu

Accountability is an often called for property of technical systems. It is a requirement for algorithmic decision systems, autonomous cyber-physical systems, and for software systems in general. As a concept, accountability goes back to the…

Software Engineering · Computer Science 2021-04-30 Severin Kacianka , Alexander Pretschner

Several deployment locations of mobile robotic systems are human made (i.e. urban firefighter, building inspection, property security) and the manager may have access to domain-specific knowledge about the place, which can provide semantic…

Robotics · Computer Science 2021-06-21 Rafael Gomes Braga , Sina Karimi , Ulrich Dah-Achinanon , Ivanka Iordanova , David St-Onge

Abbott, Altenkirch, Ghani and others have taught us that many parameterized datatypes (set functors) can be usefully analyzed via container representations in terms of a set of shapes and a set of positions in each shape. This paper builds…

Programming Languages · Computer Science 2015-07-01 Danel Ahman , James Chapman , Tarmo Uustalu

Academic research tends to focus on new models for document understanding creating a wide gap in the literature between model definition and running models at production scale. To close that gap, we present a microservice architecture that…

Machine Learning (ML) is more than just training models, the whole workflow must be considered. Once deployed, a ML model needs to be watched and constantly supervised and debugged to guarantee its validity and robustness in unexpected…

Machine Learning · Computer Science 2021-11-05 Gusseppe Bravo-Rocca , Peini Liu , Jordi Guitart , Ajay Dholakia , David Ellison , Jeffrey Falkanger , Miroslav Hodak

Structural causal models (SCMs) are a powerful tool for understanding the complex causal relationships that underlie many real-world systems. As these systems grow in size, the number of variables and complexity of interactions between them…

Artificial Intelligence · Computer Science 2023-10-13 Moritz Willig , Matej Zečević , Devendra Singh Dhami , Kristian Kersting

We identify putative load-bearing structures (bridges) in experimental colloidal systems studied by confocal microscopy. Bridges are co-operative structures that have been used to explain stability and inhomogeneous force transmission in…

Soft Condensed Matter · Physics 2010-06-18 Matthew C. Jenkins , Mark D. Haw , Gary C. Barker , Wilson C. K. Poon , Stefan U. Egelhaaf

Developing new molecular compounds is crucial to address pressing challenges, from health to environmental sustainability. However, exploring the molecular space to discover new molecules is difficult due to the vastness of the space. Here…

Machine Learning · Computer Science 2025-05-23 Manuel Ruiz-Botella , Marta Sales-Pardo , Roger Guimerà

Graph rewrite formalisms are a powerful approach to modeling complex molecular systems. They capture the intrinsic concurrency of molecular interactions, thereby enabling a formal notion of mechanism (a partially ordered set of events) that…

Logic in Computer Science · Computer Science 2019-01-04 Ioana Cristescu , Walter Fontana , Jean Krivine
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