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Building multiscale biological models requires integrating independently developed submodels, which involves sharing variables and coordinating execution. Most existing tools focus on isolated mechanisms and numerical methods, but rarely…

Quantitative Methods · Quantitative Biology 2026-01-01 Eran Agmon , Ryan K Spangler

Operating System-level virtualization technology, or containers as they are commonly known, represents the next generation of light-weight virtualization, and is primarily represented by Docker. However, Docker's current design does not…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-29 Mudit Verma , Mohan Dhawan

The bigraph embedding problem is crucial for many results and tools about bigraphs and bigraphical reactive systems (BRS). Current algorithms for computing bigraphical embeddings are centralized, i.e. designed to run locally with a complete…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-10 Alessio Mansutti , Marino Miculan , Marco Peressotti

This paper introduces a methodology for identifying and simulating financial and economic systems using stochastically structured reservoir computers (SSRCs). The framework combines structure-preserving embeddings with graph-informed…

Optimization and Control · Mathematics 2025-11-20 Lendy Banegas , Fredy Vides

Containers improve the efficiency in application deployment and thus have been widely utilised on Cloud and lately in High Performance Computing (HPC) environments. Containers encapsulate complex programs with their dependencies in isolated…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-20 Naweiluo Zhou , Huan Zhou , Dennis Hoppe

Businesses have made increasing adoption and incorporation of cloud technology into internal processes in the last decade. The cloud-based deployment provides on-demand availability without active management. More recently, the concept of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-01 Ying Mao , Yuqi Fu , Suwen Gu , Wenrui Mu , Long Cheng , Qingzhi Liu

The three traditional cloud delivery models -- IaaS, PaaS, and SaaS -- constrain access to cloud resources by hiding their raw functionality and forcing us to use them indirectly via a restricted set of actions. Can we introduce a new…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-12-12 Dan C. Marinescu , Ashkan Paya , John P. Morrison , Philip Healy

In this paper we describe how to build software architectures as a composition of state machines, using ideas and principles from the field of Domain-Driven Design. By definition, our approach is modular, allowing one to compose independent…

Software Engineering · Computer Science 2023-07-19 Marco Perone , Georgios Karachalias

The rapid development of cloud-native architecture has promoted the widespread application of container technology, but the optimization problems in container scheduling and resource management still face many challenges. This paper…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-24 Xiaoye Wang

A set of containers for a hypergraph G is a collection of vertex subsets, such that for every independent (or, indeed, merely sparse) set in G there is some subset in the collection which contains it. No set in the collection should be…

Combinatorics · Mathematics 2016-11-07 David Saxton , Andrew Thomason

With the increase in the availability of Building Information Models (BIM) and (semi-) automatic tools to generate BIM from point clouds, we propose a world model architecture and algorithms to allow the use of the semantic and geometric…

Scientists rely on simulations to study natural phenomena. Trusting the simulation results is vital to develop sciences in any field. One approach to build trust is to ensure the reproducibility and traceability of the simulations through…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-21 Paula Olaya , Jay Lofstead , Michela Taufer

The Reservoir Computing (RC) framework states that any non-linear, input-driven dynamical system (the reservoir) exhibiting properties such as a fading memory and input separability can be trained to perform computational tasks. This broad…

Emerging Technologies · Computer Science 2019-06-20 Matthew Dale , Julian F. Miller , Susan Stepney , Martin A. Trefzer

This paper introduces the idea of mining container image repositories for configuration and other deployment information of software systems. Unlike traditional software repositories (e.g., source code repositories and app stores), image…

Software Engineering · Computer Science 2018-02-14 Tianyin Xu , Darko Marinov

The compositional approach is important for reasoning about large and complex systems. In this work, we address synchronous systems with hierarchical structures, which are often used to model cyber-physical systems. We revisit the theory of…

Software Engineering · Computer Science 2024-03-19 Daisuke Ishii

While the exact definition and implementation of accountability depend on the specific context, at its core accountability describes a mechanism that will make decisions transparent and often provides means to sanction "bad" decisions. As…

Software Engineering · Computer Science 2020-05-18 Severin Kacianka , Amjad Ibrahim , Alexander Pretschner

Financial structures such as securitisations, insurance contracts, and other hierarchical claims systems can be interpreted as deterministic allocation mechanisms acting on stochastic inflow processes. This paper develops a general…

Computational Finance · Quantitative Finance 2026-02-17 Antonio Scala

The hypergraph container lemma is a powerful tool in probabilistic combinatorics that has found many applications since it was first proved a decade ago. Roughly speaking, it asserts that the family of independent sets of every uniform…

Combinatorics · Mathematics 2024-09-20 Marcelo Campos , Wojciech Samotij

Previous work has suggested that the structural restrictions of graphs from classes of bounded expansion--locally dense pockets in a globally sparse graph--naturally coincide with common properties of real-world networks such as clustering…

Data Structures and Algorithms · Computer Science 2018-04-24 Michael P. O'Brien , Blair D. Sullivan

We present Tierkreis, a higher-order dataflow graph program representation and runtime designed for compositional, quantum-classical hybrid algorithms. The design of the system is motivated by the remote nature of quantum computers, the…

Quantum Physics · Physics 2023-02-02 Seyon Sivarajah , Lukas Heidemann , Alan Lawrence , Ross Duncan