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A series of papers has developed a statistical mechanics of neocortical interactions (SMNI), deriving aggregate behavior of experimentally observed columns of neurons from statistical electrical-chemical properties of synaptic interactions.…

Biological Physics · Physics 2007-05-23 Lester Ingber

Assessing chronic pain behavior in mice is critical for preclinical studies. However, existing methods mostly rely on manual labeling of behavioral features, and humans lack a clear understanding of which behaviors best represent chronic…

Computer Vision and Pattern Recognition · Computer Science 2025-08-08 Yu-Hsi Chen , Wei-Hsin Chen , Chien-Yao Wang , Hong-Yuan Mark Liao , James C. Liao , Chien-Chang Chen

Infections depend on interactions between pathogen and host proteins, but comprehensively mapping these interactions is challenging and labor intensive. Many biological networks have hierarchical, scale-free structure, so we developed a…

Molecular Networks · Quantitative Biology 2025-11-19 Xiaoqiong Xia , Cesar de la Fuente-Nunez

Patients with idiopathic generalised epilepsy (IGE) typically have normal conventional magnetic resonance imaging (MRI), hence MRI based diagnosis is challenging. Anatomical abnormalities underlying brain dysfunctions in IGE are unclear and…

Neurons and Cognition · Quantitative Biology 2020-09-30 Nishant Sinha , Yujiang Wang , Justin Dauwels , Marcus Kaiser , Thomas Thesen , Rob Forsyth , Peter Neal Taylor

In this paper, we model the mechanics of a collagen pair in the connective tissue extracellular matrix that exists in abundance throughout animals, including the human body. This connective tissue comprises repeated units of two main…

Biomolecules · Quantitative Biology 2009-02-11 Yue Chan , Grant M. Cox , Richard G. Haverkamp , James M. Hill

Mammalian cell polarization and motility are important processes involved in many physiological and pathological phenomena, such as embryonic development, wound healing, and cancer metastasis. The traditional view of mammalian cell motility…

Soft Condensed Matter · Physics 2025-03-11 Winfried Schmidt , Walter Zimmermann , Chaouqi Misbah , Alexander Farutin

Magnetic Resonance Imaging (MRI) is a non-invasive tool for the clinical assessment of low-prevalence neuromuscular disorders. Automated diagnosis methods might reduce the need for biopsies and provide valuable information on disease…

Image and Video Processing · Electrical Eng. & Systems 2022-12-15 Rafael Rodrigues , Susana Quijano-Roy , Robert-Yves Carlier , Antonio M. G. Pinheiro

According to Jerne's idiotypic network hypothesis, the adaptive immune system is regulated by interactions between the variable regions of antibodies, B cells, and T cells.1 The symmetrical immune network theory2,3 is based on Jerne's…

Cell Behavior · Quantitative Biology 2014-03-07 Earnest Leung , Geoffrey W. Hoffmann

Jerne's idiotypic network theory postulates that the immune response involves inter-antibody stimulation and suppression as well as matching to antigens. The theory has proved the most popular Artificial Immune System (ais) model for…

Neural and Evolutionary Computing · Computer Science 2010-07-05 Amanda Whitbrook , Uwe Aickelin , Jonathan Garibaldi

Uncontrolled, excessive production of pro-inflammatory mediators from immune cells and traumatized tissues can cause systemic inflammatory issues like sepsis, one of the ten leading causes of death in the United States and one of the three…

Tissues and Organs · Quantitative Biology 2019-08-22 Atanaska Dobreva , Renee Brady , Kamila Larripa , Charles Puelz , Jesper Mehlsen , Mette S. Olufsen

Among features of real immune responses which occur when antigens invade a body,there are two remarkable features. One is that the amount of antibodies produced in the secondary invasion by the same antigens is more than 10 times larger…

Populations and Evolution · Quantitative Biology 2007-05-23 Mika Yoshida , Kinji Fuchikami , Tatsuya Uezu

Previous models of the cerebrovascular smooth muscle cell have not addressed the interaction between the electrical, chemical and mechanical components of cell function during the development of active tension. These models are primarily…

Cell Behavior · Quantitative Biology 2013-03-27 Jin Yang , John W. Clark , Robert M. Bryan , Claudia S. Robertson

Neuroimaging data allows researchers to model the relationship between multivariate patterns of brain activity and outcomes related to mental states and behaviors. However, the existence of outlying participants can potentially undermine…

Methodology · Statistics 2026-03-17 Dongliang Zhang , Masoud Asgharian , Martin A. Lindquist

The study of time-dependent, many-body transport phenomena is increasingly within reach of ultra-cold atom experiments. We show that the introduction of spatially inhomogeneous interactions, e.g., generated by optically-controlled…

Quantum Gases · Physics 2013-06-27 Chih-Chun Chien , Daniel Gruss , Massimiliano Di Ventra , Michael Zwolak

Uveitis demands the precise diagnosis of anterior chamber inflammation (ACI) for optimal treatment. However, current diagnostic methods only rely on a limited single-modal disease perspective, which leads to poor performance. In this paper,…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Qian Shao , Ye Dai , Haochao Ying , Kan Xu , Jinhong Wang , Wei Chi , Jian Wu

Parkinson's disease (PD) is a neurodegenerative disorder characterized by motor dysfunction and abnormal neural oscillations. These symptoms can be modulated through electrical stimulation. Traditional neural activity analysis in PD has…

Neurons and Cognition · Quantitative Biology 2025-02-19 Jibum Kim , Hanseul Choi , Gaeun Kim , Sunggu Yang , Eunha Baeg , Donggue Kim , Seongwon Jin , Sangwon Byun

The MARTINI coarse-grained (CG) force field is used to test the ability of CG models to simulate ionic transport through protein nanopores. The ionic conductivity of CG ions in solution was computed and compared with experimental results.…

Biological Physics · Physics 2025-10-16 Basdevant Nathalie , Dessaux Delphine , Ramirez Rosa

Myofascial pain (MP) is a leading cause of chronic low back pain, yet its tissue-level drivers remain poorly defined and lack reliable image biomarkers. Existing studies focus predominantly on muscle while neglecting fascia, fat, and other…

Multiexponential T2 (MET2) Relaxometry and Magnetization Transfer (MT) are among the most promising MRI-derived techniques for white matter (WM) characterization. Both techniques are shown to have histologically correlated sensitivity to…

Medical Physics · Physics 2019-03-26 Teresa Serradas Duarte , Noam Shemesh

Inhomogeneity and anisotropy play a crucial role in attributing articular cartilage its properties. The frictionless contact model constructed here consists in two thin biphasic transversely isotropic transversely homogeneous (TITH)…

Tissues and Organs · Quantitative Biology 2016-10-18 Gennaro Vitucci , Gennady Mishuris
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