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Microbial ecosystems exhibit a surprising amount of functionally relevant diversity at all levels of taxonomic resolution, presenting a significant challenge for most modeling frameworks. A long-standing hope of theoretical ecology is that…

Populations and Evolution · Quantitative Biology 2025-10-09 Jacob Moran , Lucas C. Graham , Mikhail Tikhonov

Mutualistic interactions, which are beneficial for both interacting species, are recurrently present in ecosystems. Observations of natural systems showed that, if we draw mutualistic relationships as binary links between species, the…

Physics and Society · Physics 2019-08-21 Clàudia Payrató Borrás , Laura Hernández , Yamir Moreno

A feature common to many models of vegetation pattern formation in semi-arid ecosystems is a sequence of qualitatively different patterned states, "gaps -> labyrinth -> spots", that occurs as a parameter representing precipitation…

Pattern Formation and Solitons · Physics 2014-10-10 Karna Gowda , Hermann Riecke , Mary Silber

Complex interactions are at the root of the population dynamics of many natural systems, particularly for being responsible for the allocation of species and individuals across apposite niches of the ecological landscapes. On the other…

Statistical Mechanics · Physics 2022-09-21 Jean-François de Kemmeter , Timoteo Carletti , Malbor Asllani

The comprehensive characterization of the structure of complex networks is essential to understand the dynamical processes which guide their evolution. The discovery of the scale-free distribution and the small world property of real…

Computational Physics · Physics 2009-11-13 Paulino R. Villas Boas , Francisco A. Rodrigues , Gonzalo Travieso , Luciano da F. Costa

The evolution of states of a spatial ecological model is studied. The model describes an infinite population of point entities placed in $\mathbb{R}^d$ which reproduce themselves at distant points (disperse) and die with rate that includes…

Dynamical Systems · Mathematics 2015-12-22 Yuri Kondratiev , Yuri Kozitsky

Constraints placed upon the phenotypes of organisms result from their interactions with the environment. Over evolutionary timescales, these constraints feed back onto smaller molecular subnetworks comprising the organism. The evolution of…

Molecular Networks · Quantitative Biology 2015-06-10 Cameron Smith , Ximo Pechuan , Raymond S. Puzio , Daniel Biro , Aviv Bergman

Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

Mutualistic interactions, where species interact to obtain mutual benefits, constitute an essential component of natural ecosystems. The use of ecological networks to represent the species and their ecological interactions allows the study…

Populations and Evolution · Quantitative Biology 2023-11-28 Clàudia Payrató-Borràs , Carlos Gracia-Lázaro , Laura Hernández , Yamir Moreno

In this paper, we study theoretically the emergence of localized states of vegetation close to the onset of desertification. These states are formed through the locking of vegetation fronts, connecting a uniform vegetation state with a bare…

Pattern Formation and Solitons · Physics 2020-06-24 P. Parra-Rivas , C. Fernandez-Oto

In a complex system, the individual components are neither so tightly coupled or correlated that they can all be treated as a single unit, nor so uncorrelated that they can be approximated as independent entities. Instead, patterns of…

Populations and Evolution · Quantitative Biology 2015-09-15 Blake C. Stacey

Understanding how desertification takes place in different ecosystems is an important step in attempting to forecast and prevent such transitions. Dryland ecosystems often exhibit patchy vegetation, which has been shown to be an important…

Pattern Formation and Solitons · Physics 2017-03-06 Yuval R. Zelnik , Hannes Uecker , Ulrike Feudel , Ehud Meron

Ecosystems are formed by networks of species and their interactions. Traditional models of such interactions assume a constant interaction strength between a given pair of species. However, there is often significant trait variation among…

Populations and Evolution · Quantitative Biology 2022-05-03 Zachary Jackson , BingKan Xue

In any ecosystem, the conditions of the environment and the characteristics of the species that inhabit it are entangled, co-evolving in space and time. We introduce a model that couples active agents with a dynamic environment, interpreted…

Populations and Evolution · Quantitative Biology 2025-12-10 G. Briozzo , G. J. Sibona , F. Peruani

Large-scale structural patterns commonly occur in network models of complex systems including a skewed node degree distribution and small-world topology. These patterns suggest common organizational constraints and similar functional…

Populations and Evolution · Quantitative Biology 2011-04-04 Stuart R. Borrett , Brian D. Fath , Bernard C. Patten

Ecological communities exhibit pervasive patterns and inter-relationships between size, abundance, and the availability of resources. We use scaling ideas to develop a unified, model-independent framework for understanding the distribution…

Statistical Mechanics · Physics 2015-05-18 Filippo Simini , Tommaso Anfodillo , Marco Carrer , Jayanth R. Banavar , Amos Maritan

Plant-pollinator mutualistic networks are asymmetric in their interactions: specialist plants are pollinated by generalist animals, while generalist plants are pollinated by a broad involving specialists and generalists. It has been…

Populations and Evolution · Quantitative Biology 2015-05-20 Guillermo Abramson , Claudia A. Trejo Soto , Leonardo Oña

The hierarchy of channel networks in landscapes displays features that are characteristic of non-equilibrium complex systems. Here we show that a sequence of increasingly complex ridge and valley networks is produced by a system of partial…

Geophysics · Physics 2019-05-09 Sara Bonetti , Milad Hooshyar , Carlo Camporeale , Amilcare Porporato

The hierarchical system of forest ecosystem models based on the theory of individual-based (structured) models of populations and communities is briefly described. New self-thinning models are integrated with tree stand models within a…

Populations and Evolution · Quantitative Biology 2007-05-23 Georgy P. Karev

Many organisms exhibit branching morphologies that twist around each other and become entangled. Entanglement occurs when different objects interlock, creating complex and often irreversible configurations. This physical phenomenon is…

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