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Joint species distribution models are popular in ecology for modeling covariate effects on species occurrence, while characterizing cross-species dependence. Data consist of multivariate binary indicators of the occurrences of different…

Methodology · Statistics 2025-07-08 Federica Stolf , David B. Dunson

We present a mathematical model based on a system of partial differential equations (PDEs) with cross-diffusion and reaction terms to describe ecological interactions between multiple bacterial species and substrates within microaggregates,…

Populations and Evolution · Quantitative Biology 2025-12-16 Viktoria Freingruber , Rebeca Gonzalez-Cabaleiro , Havva Yoldaş

Metapopulations are models of ecological systems, describing the interactions and the behavior of populations that live in fragmented habitats. In this paper, we present a model of metapopulations based on the multivolume simulation…

Computational Engineering, Finance, and Science · Computer Science 2010-08-20 Daniela Besozzi , Paolo Cazzaniga , Dario Pescini , Giancarlo Mauri

This study investigates the impacts of grazing duration and intensity on vegetation population dynamics in semi-arid ecosystems characterized by seasonal succession. A novel piecewise periodic model is proposed, dividing the annual cycle…

Dynamical Systems · Mathematics 2026-05-07 Junhong Gan , Guohong Zhang , Xiaoli Wang

Understanding the stability of complex communities is a central focus in ecology, many important theoretical advancements have been made to identify drivers of ecological stability. However, previous results often rely on the…

Populations and Evolution · Quantitative Biology 2025-04-04 Shuaiying Wang , Yuguang Yang , Aming Li

Scaling laws in ecology, intended both as functional relationships among ecologically-relevant quantities and the probability distributions that characterize their occurrence, have long attracted the interest of empiricists and…

Populations and Evolution · Quantitative Biology 2017-10-19 Silvia Zaoli , Andrea Giometto , Amos Maritan , Andrea Rinaldo

We study a two-species competition model in a patchy advective environment, where the species are subject to both directional drift and undirectional random dispersal between patches and there are losses of individuals in the downstream end…

Dynamical Systems · Mathematics 2023-03-22 Shanshan Chen , Junping Shi , Zhisheng Shuai , Yixiang Wu

Species complexes are groups of closely related populations exchanging genes through dispersal. We study the dynamics of the structure of species complexes in a class of metapopulation models where demes can exchange genetic material…

Populations and Evolution · Quantitative Biology 2026-03-26 Amaury Lambert , Emmanuel Schertzer , Yannic Wenzel

We introduce evolving networks where new vertices preferentially connect to the more central parts of a network. This makes such networks compact. Finite networks grown under the preferential compactness mechanism have complex…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. J. Alava , S. N. Dorogovtsev

We demonstrate particle clustering on macroscopic scales in a coupled nonequilibrium system where two species of particles are advected by a fluctuating landscape and modify the landscape in the process. The phase diagram generated by…

Statistical Mechanics · Physics 2016-05-24 Shauri Chakraborty , Sukla Pal , Sakuntala Chatterjee , Mustansir Barma

The effect of disturbance on a model ecosystem of sessile and mutually competitive species [Mathiesen et al. Phys. Rev. Lett. 107, 188101 (2011); Mitarai et al. Phys. Rev. E 86, 011929 (2012) ] is studied. The disturbance stochastically…

Populations and Evolution · Quantitative Biology 2015-06-18 Filippo Botta , Namiko Mitarai

In this work we introduce a statistical framework in order to analyze the spatial redundancy in natural images. This notion of spatial redundancy must be defined locally and thus we give some examples of functions (auto-similarity and…

Computer Vision and Pattern Recognition · Computer Science 2019-04-16 De Bortoli Valentin , Desolneux Agnès , Galerne Bruno , Leclaire Arthur

Darwinian evolution can be illustrated as an uphill walk in a landscape, where the surface consists of genotypes, the height coordinates represent fitness, and each step corresponds to a point mutation. Epistasis, roughly defined as the…

Quantitative Methods · Quantitative Biology 2013-05-08 Kristina Crona

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

River networks exhibit a complex ramified structure that has inspired decades of studies. Yet, an understanding of the propagation of a single stream remains elusive. Here we invoke a criterion for path selection from fracture mechanics and…

A microscopic agent dynamical model for diploid age-structured populations is used to study evolution of polymorphism and sympatric speciation. The underlying ecology is represented by a unimodal distribution of resources of some width.…

Populations and Evolution · Quantitative Biology 2015-06-26 E. Brigatti , J. S. Sa' Martins , I. Roditi

New model equations are derived for dynamics of self-aggregation of finite-size particles. Differences from standard Debye-Huckel and Keller-Segel models are: a) the mobility $\mu$ of particles depends on the locally-averaged particle…

Pattern Formation and Solitons · Physics 2009-11-11 Darryl D. Holm , Vakhtang Putkaradze

Colloidal patchy particles with divalent attractive interaction can self-assemble into linear polymer chains. Their equilibrium properties in 2D and 3D are well described by Wertheim's thermodynamic perturbation theory which predicts a…

Soft Condensed Matter · Physics 2022-09-21 H. J. Jonas , P. Schall , P. G. Bolhuis

Plant-soil feedback is recognized as a causal mechanism for the emergence of vegetation patterns of the same species especially when water is not a limiting resource (e.g. humid environments). Nevertheless, in the field, plants rarely grow…

Populations and Evolution · Quantitative Biology 2026-04-10 Addolorata Marasco , Francesco Giannino , Annalisa Iuorio

Urban structures encompass settlements, characterized by the spatial distribution of built-up areas, but also transportation structures, to connect these built-up areas. These two structures are very different in their origin and function,…

Physics and Society · Physics 2016-06-20 Frank Schweitzer , Vahan Nanumyan
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