Related papers: Mutually Uncorrelated Primers for DNA-Based Data S…
Sequence prediction methods for dynamical systems with long memory, i.e. marginally stable systems, typically achieve regret that grows polynomially with the hidden dimension of the underlying generative model. Universal Sequence…
DNA-based storage is an emerging technology that enables digital information to be archived in DNA molecules. This method enjoys major advantages over magnetic and optical storage solutions such as exceptional information density, enhanced…
While deep learning (DL)-based methods have achieved remarkable success in continuous wireless resource allocation, efficient solutions for problems involving discrete variables remain challenging. This is primarily due to the zero-gradient…
Designing domain specific neural networks is a time-consuming, error-prone, and expensive task. Neural Architecture Search (NAS) exists to simplify domain-specific model development but there is a gap in the literature for time series…
Given a set of sequences, the distance between pairs of them helps us to find their similarity and derive structural relationship amongst them. For genomic sequences such measures make it possible to construct the evolution tree of…
In wireless communications systems, the user equipment (UE) transmits a random access preamble sequence to the base station (BS) to be detected and synchronized. In standardized cellular communications systems Zadoff-Chu sequences has been…
Sequence alignment is a fundamental process in computational biology which identifies regions of similarity in biological sequences. With the exponential growth in the volume of data in bioinformatics databases, the time, processing power,…
A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex…
Motivation: High-coverage sequencing data have significant, yet hard to exploit, redundancy. Most FASTQ compressors cannot efficiently compress the DNA stream of large datasets, since the redundancy between overlapping reads cannot be…
Multilevel diversity coding is a classical coding model where multiple mutually independent information messages are encoded, such that different reliability requirements can be afforded to different messages. It is well known that {\em…
In the field of biological research, it is essential to comprehend the characteristics and functions of molecular sequences. The classification of molecular sequences has seen widespread use of neural network-based techniques. Despite their…
DNA storage technology offers new possibilities for addressing massive data storage due to its high storage density, long-term preservation, low maintenance cost, and compact size. To improve the reliability of stored information, base…
Synthetic sequence-controlled polymers promise to transform polymer science by combining the chemical versatility of synthetic polymers with the precise sequence-mediated functionality of biological proteins. However, design of these…
Background: Alignment of biological sequences such as DNA, RNA or proteins is one of the most widely used tools in computational bioscience. All existing alignment algorithms rely on heuristic scoring schemes based on biological expertise.…
Weak-memory models are standard formal specifications of concurrency across hardware, programming languages, and distributed systems. A fundamental computational problem is consistency testing: is the observed execution of a concurrent…
Recently, multi-user multiple input multiple output (MU-MIMO) systems with low-resolution digital-to-analog converters (DACs) has received considerable attention, owing to the capability of dramatically reducing the hardware cost. Besides,…
Persistent Memory (PMem), as already available, e.g., with Intel Optane DC Persistent Memory, represents a very promising, next-generation memory solution with a significant impact on database architectures. Several data structures for this…
Mutually unbiased bases (MUBs) are a primitive used in quantum information processing to capture the principle of complementarity. While constructions of maximal sets of d+1 such bases are known for systems of prime power dimension d, it is…
Massive multiuser multiple-input multiple-output (MU-MIMO) has been the mainstream technology in fifth-generation wireless systems. To reduce high hardware costs and power consumption in massive MU-MIMO, low-resolution digital-to-analog…
In DNA-based data storage, DNA codes with biochemical constraints and error correction are designed to protect data reliability. Single-stranded DNA sequences with secondary structure avoidance (SSA) help to avoid undesirable secondary…