Related papers: Mutually Uncorrelated Primers for DNA-Based Data S…
Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…
The bounded quantum storage model aims to achieve security against computationally unbounded adversaries that are restricted only with respect to their quantum memories. In this work, we provide information-theoretic secure constructions in…
A weakly consecutive sequence (WCS) is a permutation $\sigma$ of $\{1, \ldots, k\}$ such that if an integer $d$ divides $\sigma(i)$, then $d$ also divides $\sigma(i \pm d)$ insofar as these are defined. The structure of weakly consecutive…
Labeling of DNA molecules is a fundamental technique for DNA visualization and analysis. This process was mathematically modeled in [1], where the received sequence indicates the positions of the used labels. In this work, we develop error…
Skiplists are used in a variety of applications for storing data subject to order criteria. In this article we discuss the design, analysis and performance of a concurrent deterministic skiplist on many-core NUMA nodes. We also evaluate the…
We study the amount of reliable information that can be stored in a DNA-based storage system composed of short DNA molecules. In this regime, Shomorony and Heckel (2022) put forward a conjecture on the scaling of the number of information…
We consider the verification of omega-regular linear temporal properties of concurrent programs running under weak memory semantics. We observe that in particular, these properties may enforce liveness clauses, whose verification in this…
Achieving high spectral efficiency in realistic massive multi-user (MU) multiple-input multiple-output (MIMO) wireless systems requires computationally-complex algorithms for data detection in the uplink (users transmit to base-station) and…
Persistence diagrams (PDs) play a key role in topological data analysis (TDA), in which they are routinely used to describe topological properties of complicated shapes. PDs enjoy strong stability properties and have proven their utility in…
Metagenomic binning aims to cluster DNA fragments from mixed microbial samples into their respective genomes, a critical step for downstream analyses of microbial communities. Existing methods rely on deterministic representations, such as…
Compressing Deep Neural Network (DNN) models to alleviate the storage and computation requirements is essential for practical applications, especially for resource limited devices. Although capable of reducing a reasonable amount of model…
Incorporating prior knowledge on model unknowns of interest is essential when dealing with ill-posed inverse problems due to the nonuniqueness of the solution and data noise. Unfortunately, it is not trivial to fully describe our priors in…
Knowledge transfer from a source domain to a different but semantically related target domain has long been an important topic in the context of unsupervised domain adaptation (UDA). A key challenge in this field is establishing a metric…
This paper considers an uplink multiuser multiple-input-multiple-output (MU-MIMO) system with one-bit analog-to-digital converters (ADCs), in which $K$ users with a single transmit antenna communicate with one base station (BS) with $N_{\rm…
Large-scale distributed Multiuser MIMO (MU-MIMO) is a promising wireless network architecture that combines the advantages of "massive MIMO" and "small cells." It consists of several Access Points (APs) connected to a central server via a…
Sets of sequences with good correlation properties are desired in many active sensing and communication systems, e.g., multiple-input-multiple-output (MIMO) radar systems and code-division multiple-access (CDMA) cellular systems. In this…
Proteins, essential to biological systems, perform functions intricately linked to their three-dimensional structures. Understanding the relationship between protein structures and their amino acid sequences remains a core challenge in…
In conventional multi-user multiple-input multiple-output (MU-MIMO) systems with frequency division duplexing (FDD), channel acquisition and precoder optimization processes have been designed separately although they are highly coupled.…
Centromeres are essential for chromosome segregation, yet their DNA sequences evolve rapidly. In most animals and plants that have been studied, centromeres contain megabase-scale arrays of tandem repeats. Despite their importance, very…
In this paper, we propose a framework of filter-based ensemble of deep neuralnetworks (DNNs) to defend against adversarial attacks. The framework builds an ensemble of sub-models -- DNNs with differentiated preprocessing filters. From the…