Related papers: Knotting probability of self-avoiding polygons und…
We construct a tractable model to describe the rate at which a knotted polymer is ejected from a spherical capsid via a small pore. Knots are too large to fit through the pore and must reptate to the end of the polymer for ejection to…
We consider the problem of an inextensible but flexible fiber advected by a steady chaotic flow, and ask the simple question whether the fiber can spontaneously knot itself. Using a 1D Cosserat model, a simple local viscous drag model and…
For all natural numbers $N$ and prime numbers $p$, we find a knot $K$ whose skein polynomial $P_K(a,z)$ evaluated at $z=N$ has trivial reduction modulo $p$. An interesting consequence of our construction is that all polynomials $P_K(a,N)$…
Given a (genus 2) cube-with-holes M, i.e. the complement in S^3 of a handlebody H, we relate intrinsic properties of M (like its cut number) with extrinsic features depending on the way the handlebody H is knotted in S^3. Starting from a…
The lectures review the state of affairs in modern branch of mathematical physics called probabilistic topology. In particular we consider the following problems: (i) We estimate the probability of a trivial knot formation on the lattice…
We discuss the scattering function of a Gaussian random polygon with N nodes under a given topological constraint through simulation. We obtain the Kratky plot of a Gaussian polygon of N=200 having a fixed knot for some different knots such…
A minimal knot is the intersection of a topologically embedded branched minimal disk in $\mathbb{R}^4$ $\mathbb{C}^2 $ with a small sphere centered at the branch point. When the lowest order terms in each coordinate component of the…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
We study by Monte Carlo simulations a model of knotted polymer ring adsorbing onto an impenetrable, attractive wall. The polymer is described by a self-avoiding polygon (SAP) on the cubic lattice. We find that the adsorption transition…
We have evaluated by numerical simulation the average size $R_K$ of random polygons of fixed knot topology $K = \emptyset, 3_1, 3_1\sharp4_1$, and we have confirmed the scaling law $R^2_K \sim N^{2\nu_K}$ for the number $N$ of polygonal…
We introduce a two-dimensional lattice model for the description of knotted polymer rings. A polymer configuration is modeled by a closed polygon drawn on the square diagonal lattice, with possible crossings describing pairs of strands of…
We investigate the effect of knot type on the properties of a ring polymer confined to a slit. For relatively wide slits, the more complex the knot, the more the force exerted by the polymer on the walls is decreased compared to an…
This manuscript introduces a new framework for the study of knots by exploring the neighborhood of knot embeddings in the space of simple open and closed curves in 3-space. The latter gives rise to a knotoid spectrum, which determines the…
A ribbon is, intuitively, a smooth mapping of an annulus $S^1 \times I$ in 3-space having constant width $\varepsilon$. This can be formalized as a triple $(x,\varepsilon, \mathbf{u})$ where $x$ is smooth curve in 3-space and $\mathbf{u}$…
We show that, for any prime p, a knot K in the 3-sphere is determined by its p-fold cyclic unbranched covering. We also investigate when the m-fold cyclic unbranched covering of a knot coincides with the n-fold cyclic unbranched covering of…
A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The…
In this paper we study how randomly generated knots occupy a volume of space using topological methods. To this end, we consider the evolution of the first homology of an immersed metric neighbourhood of a knot's embedding for growing…
A polynomial knot is a smooth embedding $\kappa: \real \to \real^n$ whose components are polynomials. The case $n = 3$ is of particular interest. It is both an object of real algebraic geometry as well as being an open ended topological…
A slope $p/q$ is characterising for a knot $K \subset \mathbb{S}^3$ if the orientation-preserving homeomorphism type of the manifold $\mathbb{S}^3_K(p/q)$ obtained by performing Dehn surgery of slope $p/q$ along $K$ uniquely determines the…
We consider the problem of deciding whether a polygonal knot in 3-dimensional Euclidean space is unknotted, capable of being continuously deformed without self-intersection so that it lies in a plane. We show that this problem, {\sc…