Related papers: Knotting probability of self-avoiding polygons und…
We discuss the entropy of a circular polymer under a topological constraint. We call it the {\it topological entropy} of the polymer, in short. A ring polymer does not change its topology (knot type) under any thermal fluctuations. Through…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
The most tight conformations of prime knots are found with the use of the SONO algorithm. Their curvature and torsion profiles are calculated. Symmetry of the knots is analysed. Connections with the physics of polymers are discussed.
A knot K in the 3-sphere is said to have Property nR if, whenever K is a component of an n-component link L and some integral surgery on L produces the connected sum of n copies of S^1 x S^2, there is a sequence of handle slides on L that…
Given a knot K in the 3-sphere, consider a singular disk bounded by K and the intersections of K with the interior of the disk. The absolute number of intersections, minimised over all choices of singular disk with a given algebraic number…
We study the $\mathbb{CP}^2$-slicing number of knots, i.e. the smallest $m\geq 0$ such that a knot $K\subseteq S^3$ bounds a properly embedded, null-homologous disk in a punctured connected sum $(\#^m\mathbb{CP}^2)^{\times}$. We give a…
A polynomial knot in $\mathbb{R}^n$ is a smooth embedding of $\mathbb{R}$ in $\mathbb{R}^n$ such that the component functions are real polynomials. In the earlier paper with Mishra, we have studied the space $\mathcal{P}$ of polynomial…
Many experiments have been done to determine the relative strength of different knots, and these show that the break in a knotted rope almost invariably occurs at a point just outside the `entrance' to the knot. The influence of knots on…
We study the equilibrium shapes of prime and composite knots confined to two dimensions. Using rigorous scaling arguments we show that, due to self-avoiding effects, the topological details of prime knots are localised on a small portion of…
For each sequence of polynomials, P=(p_1(t),p_2(t),...), we define a characteristic series of groups, called the derived series localized at P. Given a knot K in S^3, such a sequence of polynomials arises naturally as the orders of certain…
We study knots in $\mathbb{S}^3$ obtained by the intersection of a minimal surface in $\mathbb{R}^4$ with a small 3-sphere centered at a branch point. We construct examples of new minimal knots. In particular we show the existence of…
We explore free knot diagrams, which are projections of knots into the plane which don't record over/under data at crossings. We consider the combinatorial question of which free knot diagrams give which knots and with what probability.…
Relative self-linking and linking "numbers" for pairs of knots in oriented 3-manifolds are defined in terms of intersection invariants of immersed surfaces in 4-manifolds. The resulting concordance invariants generalize the usual…
Global textures are interesting because they are promising candidates for seeds in the structure formation of the universe. The important configurations are those who will be able to collapse. The type of configurations that I will consider…
We study a family of scale-invariant $p$-densities of knot types in $R^3$, defined as the ratio of length to an $L^p$-type spread of pairwise distances along a curve. The first point of the paper is that the unconstrained theory has a…
Inspired by how certain proteins "sense" knots and entanglements in DNA molecules, here we ask if there exist local geometric features that may be used as a read-out of the underlying topology of generic polymers. We perform molecular…
A physical interpretation of the rope simulated by the SONO algorithm is presented. Properties of the tight polygonal knots delivered by the algorithm are analyzed. An algorithm for bounding the ropelength of a smooth inscribed knot is…
We consider the folding of a self-avoiding homopolymer on a lattice, with saturating hydrogen bond interactions. Our goal is to numerically evaluate the statistical distribution of the topological genus of pseudoknotted configurations. The…
We examine numerically the distribution function $f_K(r)$ of distance $r$ between opposite polygonal nodes for random polygons of $N$ nodes with a fixed knot type $K$. Here we consider three knots such as $\emptyset$, $3_1$ and $3_1 \sharp…
We discuss an "extrinsic" property of knots in a 3-subspace of the 3-sphere $S^3$ to characterize how the subspace is embedded in $S^3$. Specifically, we show that every knot in a subspace of the 3-sphere is transient if and only if the…