Related papers: Knotting probability of self-avoiding polygons und…
Early last century witnessed both the complete classification of 2-dimensional manifolds and a proof that classification of 4-dimensional manifolds is undecidable, setting up 3-dimensional manifolds as a central battleground of topology to…
We have examined the behaviors of a knotted linear polymer in narrow tubes using Langevin dynamics simulation to investigate the knot localization property in one-dimensional (1D) geometry. We have found that the knot is strongly localized…
Let $K$ be a tame knot embedded in $\mathbf{S}^3$. We address the problem of finding the minimal degree non-cyclic cover $p:X \rightarrow \mathbf{S}^3 \smallsetminus K$. When $K$ has non-trivial Alexander polynomial we construct finite…
We examine computer experiments that can be performed to understand the dynamics of knots under self-repulsion. In the course of specific computer exploration we use the knot theory of rational knots and rational tangles to produce classes…
We consider a model for complex networks that was recently proposed as a model for complex networks by Krioukov et al. In this model, nodes are chosen randomly inside a disk in the hyperbolic plane and two nodes are connected if they are at…
We extend knot contact homology to a theory over the ring $\mathbb{Z}[\lambda^{\pm 1},\mu^{\pm 1}]$, with the invariant given topologically and combinatorially. The improved invariant, which is defined for framed knots in $S^3$ and can be…
A knot K is called n-adjacent to another knot K', if K admits a projection containing n generalized crossings such that changing any 0 < m \leq n of them yields a projection of K'. We apply techniques from the theory of sutured 3-manifolds,…
Knots are abundant in globular homopolymers but rare in globular proteins. To shed new light on this long-standing conundrum, we study the influence of sequence on the formation of knots in proteins under native conditions within the…
For a knot K in S^3, let T(K) be the characteristic toric sub-orbifold of the orbifold (S^3,K) as defined by Bonahon and Siebenmann. If K has unknotting number one, we show that an unknotting arc for K can always be found which is disjoint…
The interplay of geometrical and topological entanglement in semiflexible knotted polymer rings confined inside a spherical cavity is investigated using advanced numerical methods. By using stringent and robust algorithms for locating…
Recent studies classify the topology of proteins by analysing the distribution of their projections using knotoids. The approximation of this distribution depends on the number of projection directions that are sampled. Here we investigate…
Let $M_n$ be the topological moduli space of all parallel n-cables of long framed oriented knots in 3-space. We construct in a combinatorial way for each natural number $n>1$ a 1-cocycle $R_n$ which represents a non trivial class in…
We introduce swept-area pseudometrics on ropelength-filtered spaces of knot representatives. For a knot type \(K\) and a ropelength level \(\Lambda\), admissible isotopies are required to pass through curves of thickness at least one and…
The study of knots and links from a probabilistic viewpoint provides insight into the behavior of "typical" knots, and opens avenues for new constructions of knots and other topological objects with interesting properties. The knotting of…
We study random knotting by considering knot and link diagrams as decorated, (rooted) topological maps on spheres and pulling them uniformly from among sets of a given number of vertices $n$, as first established in recent work with…
In "Width complexes for knots and 3-manifolds," Jennifer Schultens defines the width complex for a knot in order to understand the different positions a knot can occupy in the 3-sphere and the isotopies between these positions. She poses…
A {\it stuck knot} is a knot diagram containing designated crossings, called {\it stuck crossings}, whose incident strands are required to remain locally non-separable. These rigidity constraints restrict the allowable ambient isotopies and…
We conjecture formulae of the colored superpolynomials for a class of twist knots $K_p$ where p denotes the number of full twists. The validity of the formulae is checked by applying differentials and taking special limits. Using the…
For a knot $K$ in the 3-sphere and a simply connected closed 4-manifold $X$, we define the $X$-double slice genus of $K$, extending the notion from the case when $X$ is the 4-sphere. We show that for each integer $n$, there exists an…
We describe four hyperbolic knot complements in $\mathbb{S}^3$, each of which covers a prism orbifold: the quotient of $\mathbb{H}^3$ by the action of a discrete group generated by reflections in the faces of a polyhedron that has the…