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Genetic regulatory networks are defined by their topology and by a multitude of continuously adjustable parameters. Here we present a class of simple models within which the relative importance of topology vs. interaction strengths becomes…

Molecular Networks · Quantitative Biology 2013-08-02 Mikhail Tikhonov , William Bialek

The space of all finite non-empty subsets of a topological space $X$, also known as the Ran space of $X$, is weakly contractible for $X$ path connected. We consider subspaces $\mathrm{Ran}_{\leqslant n}(X)$ of the Ran space given by all…

Algebraic Topology · Mathematics 2026-02-20 Jānis Lazovskis

Two distinct structures of aggregates of atoms connected by anisotropic bonds with a network configuration are discussed from the viewpoint of a point set topology. A specific topological space connects the two types of topological…

Mathematical Physics · Physics 2017-08-10 Shousuke Ohmori , Tomoyuki Yamamoto , Akihiko Kitada

We define and develop a homotopy invariant notion for the topological complexity of a map $f:X \to Y$, denoted TC($f$), that interacts with TC($X$) and TC($Y$) in the same way cat($f$) interacts with cat($X$) and cat($Y$). Furthermore,…

Algebraic Topology · Mathematics 2020-11-24 Jamie Scott

We study the geodesic complexity of the ordered and unordered configuration spaces of graphs in both the $\ell_1$ and $\ell_2$ metrics. We determine the geodesic complexity of the ordered two-point $\varepsilon$-configuration space of any…

Geometric Topology · Mathematics 2022-08-10 Donald M. Davis , Michael Harrison , David Recio-Mitter

In the present contribution three means of measuring the geometrical and topological complexity of photons' paths in random media are proposed. This is realized by investigating the behavior of the average crossing number, the mean writhe,…

Optics · Physics 2019-10-30 Tiziano Binzoni , Fabrizio Martelli , David Cimasoni

For a pair of spaces $X$ and $Y$ such that $Y \subseteq X$, we define the relative topological complexity of the pair $(X,Y)$ as a new variant of relative topological complexity. Intuitively, this corresponds to counting the smallest number…

Algebraic Topology · Mathematics 2017-10-18 Robert Short

We consider locally checkable labeling LCL problems in the LOCAL model of distributed computing. Since 2016, there has been a substantial body of work examining the possible complexities of LCL problems. For example, it has been established…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-14 Yi-Jun Chang

The topological (resp. geodesic) complexity of a topological (resp. metric) space is roughly the smallest number of continuous rules required to choose paths (resp. shortest paths) between any points of the space. We prove that the geodesic…

Metric Geometry · Mathematics 2023-08-09 Donald M. Davis

We survey results on the topological complexity of classical configuration spaces of distinct ordered points in orientable surfaces and related spaces, including certain orbit configuration spaces and Eilenberg-Mac Lane spaces associated to…

Algebraic Topology · Mathematics 2019-08-27 Daniel C. Cohen

The complexity of a graph is the number of its labeled spanning trees. In this work complexity is studied in settings that admit regular graphs. An exact formula is established linking complexity of the complement of a regular graph to…

Combinatorics · Mathematics 2025-08-18 Gregory P Constantine , Gregory Magda

Inspired by studies on the airports' network and the physical Internet, we propose a general model of weighted networks via an optimization principle. The topology of the optimal network turns out to be a spanning tree that minimizes a…

Physics and Society · Physics 2009-11-11 Marc Barthelemy , Alessandro Flammini

In this paper, we introduce the notion of transversal topological complexity (TTC) for a smooth manifold $X$ with respect to a submanifold of codimension 1 together with basic results about this numerical invariant. In addition, we present…

Algebraic Topology · Mathematics 2023-03-14 Cesar A. Ipanaque Zapata , Fernando R. Chu Rivera

We introduce and study the proper topological complexity of a given configuration space, a version of the classical invariant for which we require that the algorithm controlling the motion is able to avoid any possible choice of ``unsafe''…

Algebraic Topology · Mathematics 2025-01-27 Jose M. Garcia-Calcines , Aniceto Murillo

In this paper, we explore a taxonomy of connectivity for space-like structures. It is inspired by isolating posets of connected pieces of a space and examining its embedding in the ambient space. The taxonomy includes in its scope all…

General Topology · Mathematics 2026-05-11 Jean F. Du Plessis , Zurab Janelidze , Bernardus A. Wessels

Complex networks are universal, arising in fields as disparate as sociology, physics, and biology. In the past decade, extensive research into the properties and behaviors of complex systems has uncovered surprising commonalities among the…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Claire Christensen , Reka Albert

The topology of many real complex networks has been conjectured to be embedded in hidden metric spaces, where distances between nodes encode their likelihood of being connected. Besides of providing a natural geometrical interpretation of…

Physics and Society · Physics 2017-01-23 Antoine Allard , M. Ángeles Serrano , Guillermo García-Pérez , Marián Boguñá

Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…

Combinatorics · Mathematics 2015-06-24 Art M. Duval , Caroline J. Klivans , Jeremy L. Martin

We present upper and lower bounds for symmetrized topological complexity $TC^\Sigma(X)$ in the sense of Basabe-Gonz\'alez-Rudyak-Tamaki. The upper bound comes from equivariant obstruction theory, and the lower bounds from the cohomology of…

Algebraic Topology · Mathematics 2020-04-23 Mark Grant

We construct a completed version C(Gamma) of the configuration space of a linkage Gamma in R^3 which takes into account the ways one link can touch another. We also describe a simplified version of C(Gamma) which is a blow-up of the space…

Algebraic Topology · Mathematics 2017-05-26 David Blanc , Nir Shvalb