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We investigate the design challenges of constructing effective and efficient neural sequence labeling systems, by reproducing twelve neural sequence labeling models, which include most of the state-of-the-art structures, and conduct a…

Computation and Language · Computer Science 2018-07-13 Jie Yang , Shuailong Liang , Yue Zhang

The rise of generative neural networks has triggered an increased demand for intellectual property (IP) protection in generated content. Deep watermarking techniques, recognized for their flexibility in IP protection, have garnered…

Cryptography and Security · Computer Science 2024-02-27 Biqing Qi , Junqi Gao , Yiang Luo , Jianxing Liu , Ligang Wu , Bowen Zhou

Software watermarking allows for embedding a mark into a piece of code, such that any attempt to remove the mark will render the code useless. Provably secure watermarking schemes currently seems limited to programs computing various…

Cryptography and Security · Computer Science 2024-10-15 Jiahui Liu , Mark Zhandry

Hinging on ideas from physical-layer network coding, some promising proposals of coded random access systems seek to improve system performance (while preserving low complexity) by means of packet repetitions and decoding of linear…

Information Theory · Computer Science 2018-05-30 Adriano Pastore , Paul de Kerret , Monica Navarro , David Gregoratti , David Gesbert

As large language models (LLMs) become integral to applications such as question answering and content creation, reliable content attribution has become increasingly important. Watermarking is a promising approach, but most existing methods…

Cryptography and Security · Computer Science 2026-05-11 Ya Jiang , Massieh Kordi Boroujeny , Surender Suresh Kumar , Kai Zeng

In the last decade a number of algorithms and associated software have been developed to align next generation sequencing (NGS) reads with relevant reference genomes. The accuracy of these programs may vary significantly, especially when…

Btrim is a fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines. It also can reliably identify barcodes and assign the reads to the original samples.…

Genomics · Quantitative Biology 2024-05-28 Yong Kong

In this paper, network error control coding is studied for robust and efficient multicast in a directed acyclic network with imperfect links. The block network error control coding framework, BNEC, is presented and the capability of the…

Information Theory · Computer Science 2008-09-25 Hossein Bahramgiri , Farshad Lahouti

Next-generation sequencing technologies generate millions of short sequence reads, which are usually aligned to a reference genome. In many applications, the key information required for downstream analysis is the number of reads mapping to…

Genomics · Quantitative Biology 2016-07-26 Yang Liao , Gordon K Smyth , Wei Shi

The rapid adoption of large language models (LLMs), such as GPT-4 and Claude 3.5, underscores the need to distinguish LLM-generated text from human-written content to mitigate the spread of misinformation and misuse in education. One…

Machine Learning · Statistics 2025-11-11 Xingchi Li , Xiaochi Liu , Guanxun Li

We propose a methodology for planting watermarks in text from an autoregressive language model that are robust to perturbations without changing the distribution over text up to a certain maximum generation budget. We generate watermarked…

Machine Learning · Computer Science 2024-06-07 Rohith Kuditipudi , John Thickstun , Tatsunori Hashimoto , Percy Liang

As large language models (LLM) are increasingly used for text generation tasks, it is critical to audit their usages, govern their applications, and mitigate their potential harms. Existing watermark techniques are shown effective in…

Machine Learning · Computer Science 2024-08-09 Chaoyi Zhu , Jeroen Galjaard , Pin-Yu Chen , Lydia Y. Chen

In the last few years, de novo molecular design using machine learning has made great technical progress but its practical deployment has not been as successful. This is mostly owing to the cost and technical difficulty of synthesizing such…

Biomolecules · Quantitative Biology 2022-04-06 Qi Zhang , Chang Liu , Stephen Wu , Ryo Yoshida

Active, responsive, nonequilibrium materials, at the forefront of materials engineering, offer dynamical restructuring, mobility and other complex life-like properties. Yet, this enhanced functionality comes with significant amplification…

DNA Data storage has recently attracted much attention due to its durable preservation and extremely high information density (bits per gram) properties. In this work, we propose a hybrid coding strategy comprising of generalized…

Information Theory · Computer Science 2021-12-20 Yixin Wang , Li Deng , Md. Noor-A-Rahim , Erry Gunawan , Yong L. Guan , Zhi P. Shi , Chueh L. Poh

Current image watermarking technologies are predominantly categorized into text watermarking techniques and image steganography; however, few methods can simultaneously handle text and image-based watermark data, which limits their…

Multimedia · Computer Science 2025-06-03 ZhongLi Fang , Yu Xie , Ping Chen

Watermarking techniques offer a promising way to identify machine-generated content via embedding covert information into the contents generated from language models. A challenge in the domain lies in preserving the distribution of original…

Cryptography and Security · Computer Science 2024-06-26 Yihan Wu , Zhengmian Hu , Junfeng Guo , Hongyang Zhang , Heng Huang

Watermarking is a technical means to dissuade malfeasant usage of Large Language Models. This paper proposes a novel watermarking scheme, so-called WaterMax, that enjoys high detectability while sustaining the quality of the generated text…

Cryptography and Security · Computer Science 2024-10-21 Eva Giboulot , Teddy Furon

We demonstrate that while the current approaches for language model watermarking are effective for open-ended generation, they are inadequate at watermarking LM outputs for constrained generation tasks with low-entropy output spaces.…

Cryptography and Security · Computer Science 2026-01-21 Nghia T. Le , Alan Ritter , Kartik Goyal

This paper studies the problem of encoding messages into sequences which can be uniquely recovered from some noisy observations about their substrings. The observed reads comprise consecutive substrings with some given minimum overlap. This…

Information Theory · Computer Science 2023-12-11 Hengjia Wei , Moshe Schwartz , Gennian Ge
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